PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498823.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family CO-like
Protein Properties Length: 353aa    MW: 38986.3 Da    PI: 7.019
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.72.6e-094384540
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     C+ +++  ++lfC++++ +lC  C +++H        H +v
  XP_004498823.1 43 LCDSCKSATATLFCRSDSAFLCIVCDSNIHAAnklasrHHRV 84
                    7*****************************667888885444 PP
2zf-B_box22.72.1e-0784129342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                        C+ +e+ +++  C+ +   lC +C   +H+       H++vpl
  XP_004498823.1  84 VSLCEVCEQAPAHVTCKADAASLCISCDHDIHSAnplarrHERVPL 129
                     568*****************************66899999*99986 PP
3CCT70.34.7e-24286329144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_004498823.1 286 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 329
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.1773986IPR000315B-box-type zinc finger
SMARTSM003363.3E-133986IPR000315B-box-type zinc finger
PfamPF006432.6E-64385IPR000315B-box-type zinc finger
CDDcd000212.73E-94386No hitNo description
PROSITE profilePS5011910.8582129IPR000315B-box-type zinc finger
PfamPF006431.6E-585129IPR000315B-box-type zinc finger
CDDcd000213.27E-786129No hitNo description
SMARTSM003367.2E-887129IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787286328IPR010402CCT domain
PfamPF062035.3E-18286328IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MPYPHNHNHT SIVTLPIQFN TLTTLSTFKA TLNSINKQMA TKLCDSCKSA TATLFCRSDS  60
AFLCIVCDSN IHAANKLASR HHRVSLCEVC EQAPAHVTCK ADAASLCISC DHDIHSANPL  120
ARRHERVPLT TFNHNSNQPF FSDAEHDADV TNEEAEAASW LLQTPSHPKG PDLNSSHYSF  180
HEIDNAGIDF VSVDAKTDSP EQHSPGGTAD GVVPVQSHSK TAAEHYSDIN IDFSNSKPFT  240
YSYNHNASSP SMEVGVVPDG NAMSEISYCC YGRAATEAVQ ITAADREARV LRYREKRKNR  300
KFEKTIRYAS RKAYAETRPR IKGRFAKRTD MNVNVNLIAE DESYTGYGVV PSC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498823.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498823.10.0zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T91e-101COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A1S2Y3K20.0A0A1S2Y3K2_CICAR; zinc finger protein CONSTANS-LIKE 4-like
STRINGXP_004498823.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-103CONSTANS-like 4