PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004496554.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Nin-like

Protein Properties

Length: 976aa MW: 108253 Da PI: 5.1933

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004496554.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.6	1.2e-28	575	625	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_004496554.1 575 EKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 625 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.507	564	645	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-25	578	625	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.09E-22	877	966	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.9E-25	880	962	No hit	No description
PROSITE profile	PS51745	24.428	880	963	IPR000270	PB1 domain
SMART	SM00666	4.1E-25	880	963	IPR000270	PB1 domain
Pfam	PF00564	3.7E-17	880	962	IPR000270	PB1 domain
CDD	cd06407	4.69E-37	881	962	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 976 aa Download sequence Send to blast
MAESEEENQE FLPKTKTSSL EEHGCCAMDF DLDLETSWPL DHMSFVSNPM SPFQFSTISD 60 QPSSPLWAFT DGEDDKHVKL AASALSDCHK IFSSDSNSIT EKPVENDENK KHLPPLVPPI 120 ENLNGYCAIK EKMTQALRYF KEWTELNVLA QVWAPVRNGN RYMLTTSGQP FVLDDPHSNG 180 LCQYRTVSLM YMFSVDGEND GTLGLPGRVF QQKLPEWSPN VQYYTSKEYP RRYYAQHYNV 240 RGTLALPVFE TSLQSCIGVL ELIMTSPKIN YAPEVEKICK ALEAVNLRSS EILDYPYTQI 300 CNEGRQNALS EILEILTVVC ETHNLPLAQT WVPCRHRSIL AHGGGLKKSC SSFDGSCMGQ 360 VCMSTTEVAL YIIDPHLWGF REACVEHHLQ QGQGVAGRAF LSQNMSFCTN ITQFCKTDYP 420 LVHYALMFGL TSCFSICLRS SHTGNDYYVL EFFLPPNITE FHEQKTLLGS ILAIMKQHFQ 480 SLKIAAGVEL GEDGSIEIIE AMDESVHIRI ESIPIVQSIK SPPRPDASPN MEEDKVPQDP 540 SDIQGENIGG NIDQVSFLGN KNVKKPSERK RGKTEKSISL EVLQRYFAGS LKDAAKSLGV 600 CPTTMKRICR QHGISRWPSR KINKVNRSLS KLKRVIESVQ GGEGAFDLNS LNTNQLPIVS 660 SFPEPSTPNT SNQQASLSIR PSEPQIKENG IDASKVSETN IEVVMEDQLL GGRKRSLGKE 720 VIINDKGVPV QKVRARSGSS GDSTNPISHD SCHGSPPIES STIKEIFIPS NNEQCVALKG 780 SPESRVQPTN GFNSASAYRM PDNVIAELEE PFGGMLIEDA GSSKDLRNLC PSVAEAILED 840 MAPEPCGTNL PGSSYLAPKQ CMDTINTSTT PFAARKEMKT VTIKATYRED IIRFRVTLTC 900 GIVELKEEIA KRLKLEVGTF DVKYLDDDHE WVLIACDADL QECIDVTRSS GGSNIIRVLV 960 HDITSNLGSA YESSGE

Sequence ? help Back to Top

Protein Sequence Length: 976 aa Download sequence Send to blast

MAESEEENQE FLPKTKTSSL EEHGCCAMDF DLDLETSWPL DHMSFVSNPM SPFQFSTISD  60
QPSSPLWAFT DGEDDKHVKL AASALSDCHK IFSSDSNSIT EKPVENDENK KHLPPLVPPI  120
ENLNGYCAIK EKMTQALRYF KEWTELNVLA QVWAPVRNGN RYMLTTSGQP FVLDDPHSNG  180
LCQYRTVSLM YMFSVDGEND GTLGLPGRVF QQKLPEWSPN VQYYTSKEYP RRYYAQHYNV  240
RGTLALPVFE TSLQSCIGVL ELIMTSPKIN YAPEVEKICK ALEAVNLRSS EILDYPYTQI  300
CNEGRQNALS EILEILTVVC ETHNLPLAQT WVPCRHRSIL AHGGGLKKSC SSFDGSCMGQ  360
VCMSTTEVAL YIIDPHLWGF REACVEHHLQ QGQGVAGRAF LSQNMSFCTN ITQFCKTDYP  420
LVHYALMFGL TSCFSICLRS SHTGNDYYVL EFFLPPNITE FHEQKTLLGS ILAIMKQHFQ  480
SLKIAAGVEL GEDGSIEIIE AMDESVHIRI ESIPIVQSIK SPPRPDASPN MEEDKVPQDP  540
SDIQGENIGG NIDQVSFLGN KNVKKPSERK RGKTEKSISL EVLQRYFAGS LKDAAKSLGV  600
CPTTMKRICR QHGISRWPSR KINKVNRSLS KLKRVIESVQ GGEGAFDLNS LNTNQLPIVS  660
SFPEPSTPNT SNQQASLSIR PSEPQIKENG IDASKVSETN IEVVMEDQLL GGRKRSLGKE  720
VIINDKGVPV QKVRARSGSS GDSTNPISHD SCHGSPPIES STIKEIFIPS NNEQCVALKG  780
SPESRVQPTN GFNSASAYRM PDNVIAELEE PFGGMLIEDA GSSKDLRNLC PSVAEAILED  840
MAPEPCGTNL PGSSYLAPKQ CMDTINTSTT PFAARKEMKT VTIKATYRED IIRFRVTLTC  900
GIVELKEEIA KRLKLEVGTF DVKYLDDDHE WVLIACDADL QECIDVTRSS GGSNIIRVLV  960
HDITSNLGSA YESSGE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004496554.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC131240	0.0	AC131240.32 Medicago truncatula clone mth2-33j22, complete sequence.
GenBank	AC146755	0.0	AC146755.23 Medicago truncatula clone mth2-15i15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004496554.1	0.0	protein NLP6 isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A1S2XYJ3	0.0	A0A1S2XYJ3_CICAR; protein NLP6 isoform X1
STRING	XP_004496554.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]