PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g15060
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 165aa    MW: 19046 Da    PI: 9.8255
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g15060genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.62.1e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien+snrqvt+skRrngilKKA+E+SvLCda+v+viif+++gk++e+ss
  CA11g15060  9 KRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFATSGKMHEFSS 59
                79***********************************************96 PP
2K-box76.85.6e-2669138170
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                 y+k +g++l++ak+e+l++e++++kk ++n+q e+Rhl+Ged++sL+++eL+ Le+ Le++l++iR+k+ 
  CA11g15060  69 YHKLTGRRLWDAKHENLDNEINRVKKDNDNMQIELRHLKGEDISSLNYRELMILEDGLENGLTSIRDKQV 138
                 78999999***********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.142161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-38160IPR002100Transcription factor, MADS-box
CDDcd002657.98E-41278No hitNo description
SuperFamilySSF554554.84E-36294IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-1580137IPR002487Transcription factor, K-box
PROSITE profilePS5129710.32882164IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGILK KAKEISVLCD ARVSVIIFAT SGKMHEFSST  60
SLVDILDQYH KLTGRRLWDA KHENLDNEIN RVKKDNDNMQ IELRHLKGED ISSLNYRELM  120
ILEDGLENGL TSIRDKQVPT ISFNIFVMFK FNLINVYVLI YLSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A5e-18189183MEF2 CHIMERA
6bz1_B5e-18189183MEF2 CHIMERA
6bz1_C5e-18189183MEF2 CHIMERA
6bz1_D5e-18189183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8534170.0HQ853417.1 Iochroma cyaneum MADS box transcription factor (GLO1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016537864.14e-94PREDICTED: floral homeotic protein FBP1 isoform X1
SwissprotQ034163e-91GLOB_TOBAC; Floral homeotic protein GLOBOSA
TrEMBLA0A2G2YXC01e-93A0A2G2YXC0_CAPAN; Floral homeotic protein GLOBOSA
STRINGSolyc08g067230.2.11e-90(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46802139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-64MIKC_MADS family protein