PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA11g14630

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YC

Protein Properties

Length: 281aa MW: 30629.8 Da PI: 4.5685

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA11g14630	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	54.2	3.3e-17	1	75	24	98
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +P l+ska elf+ +l r++ + ++ +t++ +++++++ ++fdfl d+v r CA11g14630 1 ARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYDITLKKGAKTMNSFHLKQCIQSFNVFDFLKDVVSR 75 7***********************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-22	1	74	IPR009072	Histone-fold
Pfam	PF00808	2.8E-15	1	60	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	7.38E-19	7	76	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
ARIKKIMQAD EDVGKIAMAV PLLVSKALEL FLQDLCDRTY DITLKKGAKT MNSFHLKQCI 60 QSFNVFDFLK DVVSRVPDLG GPDAGAESAT KRRKVADEDD HDSDDDIKRN HANETANNSS 120 SGRGRGRGRG RGRGRGARAA EKGDSNVHSE KLEDPAGVSH QKDDEKPKQN DERMVDYVAE 180 PAADTKNISA AKSSEAVPAR NFDLNIDLNE SVESTPIPSE APSSSTAPPP PEVLLPPEVK 240 HEEIPGWSLS EMEKMAIDPI QLANLNKGLD EEEEDYDEEG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-18	1	61	15	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	134	RGRGRGRGRGR
2	126	135	RGRGRGRGRG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC244600	2e-50	AC244600.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-39b1 map 10, complete sequence.
GenBank	HG975450	2e-50	HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBank	HG975523	2e-50	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016548507.1	0.0	PREDICTED: dr1-associated corepressor-like
TrEMBL	A0A2G3BAH8	0.0	A0A2G3BAH8_CAPCH; Dr1-associated corepressor
STRING	PGSC0003DMT400070450	1e-139	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7555	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	7e-51	NF-YC family protein