PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g08120
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 331aa    MW: 36939.7 Da    PI: 6.9429
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g08120genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.5e-32191248259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK vk+s+fpr+YYrCt+++C+vkk+vers ed ++v++tYeg+Hnh+
  CA09g08120 191 EDGYRWRKYGQKAVKNSPFPRNYYRCTTQKCSVKKRVERSYEDASIVITTYEGQHNHH 248
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-34175250IPR003657WRKY domain
SuperFamilySSF1182901.31E-28182250IPR003657WRKY domain
PROSITE profilePS5081131.169185250IPR003657WRKY domain
SMARTSM007741.9E-37190249IPR003657WRKY domain
PfamPF031062.2E-25191248IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSDNPFYHDY MGTSGGINTF PFFGENPSNY HDQPIIPNIQ NPNHEHQFVP SSYMTLTECL  60
HGSMDYNTLS SVFGMSCSSS SEVVCPHIDN QGSTRKSSVS ATAEPILDSP MGDQTSVEVP  120
PTPNSSISST SNEAGGQEDS SKIKKHMQNK DGQEGRDDKS KKECKATKKG EKKVKEPRFA  180
FMTKSEIDNL EDGYRWRKYG QKAVKNSPFP RNYYRCTTQK CSVKKRVERS YEDASIVITT  240
YEGQHNHHCP AALRGNASFL SSPHFMPSFP PQLFSQMLIP PTSNQNLLIT SEAYNNINNN  300
NYHQQNQGSE YNLFGGGTND ASWIQKQEPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-251832511078Probable WRKY transcription factor 4
2lex_A7e-251832511078Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-116HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350002.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLA0A2G2YT550.0A0A2G2YT55_CAPAN; Putative WRKY transcription factor 23
STRINGPGSC0003DMT4000201020.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46350.13e-45WRKY DNA-binding protein 8