PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g15490
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 319aa    MW: 36500.1 Da    PI: 7.1361
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g15490genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.11.8e-33175232259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk+vers +dp++v++tYeg+Hnh+
  CA07g15490 175 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCSVKKRVERSYQDPSIVITTYEGQHNHH 232
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-35159234IPR003657WRKY domain
SuperFamilySSF1182903.53E-29166234IPR003657WRKY domain
PROSITE profilePS5081131.996169234IPR003657WRKY domain
SMARTSM007749.7E-39174233IPR003657WRKY domain
PfamPF031061.5E-26175232IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSDNNPFHHD YAFPFFGENP SIYDHQVENT QNPHQDFDYP SSYMSSLTEC LHGGSMDHYN  60
SLSSAFGMNH RTSSSEVVCP PPIDHHHHQE LSRKNSVDHH HQIPLTPNSL ISSSSNSEPG  120
CHEEDSSKIK KDDQCEDGGD DDKSKKVNKA KKKGEKKQKE PRFAFMTKSE IDNLEDGYRW  180
RKYGQKAVKN SPFPRSYYRC TSQKCSVKKR VERSYQDPSI VITTYEGQHN HHCPATLRGN  240
AAAALLSPAS FLSSSQQQLF HNPSEQQLFY NPNLPINNSF YNNYHQHQHQ MQPQLGPDNY  300
QYGVFQDMVA SLIHKREP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-261672351078Probable WRKY transcription factor 4
2lex_A4e-261672351078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1700360.0KC170036.1 Solanum lycopersicum WRKY16 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581006.10.0PREDICTED: probable WRKY transcription factor 71
SwissprotQ8VWJ21e-54WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A1U8HC830.0A0A1U8HC83_CAPAN; Putative WRKY transcription factor 8
TrEMBLA0A2G2WG140.0A0A2G2WG14_CAPBA; Putative WRKY transcription factor 8
TrEMBLA0A2G2Z4F40.0A0A2G2Z4F4_CAPAN; probable WRKY transcription factor 71
STRINGPGSC0003DMT4000447211e-170(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.17e-46WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]