PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g25880

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

FAR1

Protein Properties

Length: 101aa MW: 11265.3 Da PI: 5.667

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g25880	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.9	3.2e-08	49	93	2	47
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 Yn+YA GF v+k +++s +ge+t+r f Cs+eg++++ + CA06g25880 49 AYNSYAVARGFGVQKGGKTNS-IKGETTRRLFLCSCEGQSDKLSPF 93 5*************98888.8889**********99886655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.2E-6	49	93	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MEDAHGDKGK DSSAHEDFSV NEPNICNTSK NFVFEIDMKF NSEEESYNAY NSYAVARGFG 60 VQKGGKTNSI KGETTRRLFL CSCEGQSDKL SPFQERKHKD *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009628526.1	3e-20	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_009771804.1	2e-20	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A2G2ZED8	2e-68	A0A2G2ZED8_CAPAN; Uncharacterized protein
STRING	Solyc05g014930.1.1	1e-30	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1726	9	31