PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g22340

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

FAR1

Protein Properties

Length: 881aa MW: 100331 Da PI: 6.5113

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g22340	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.6	6.4e-11	64	132	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA+++GF++r+ + ++ k +f C k g r+ + ++ C+a+l+v+++ ++kw+vtk ++eH+H+l+ CA06g22340 64 NFYDEYARRLGFTTRVCQFNRL-------KTDFLCDKVGLRRVSGES--------------CDAMLRVELKGQNKWVVTKYVKEHSHSLV 132 6**************98876.......789*****998877..............************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-7	64	132	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-25	270	360	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.09	548	584	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.1E-9	548	581	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-6	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence Send to blast
MNVEVIDVEE GKMHQQGGIA DDGDDEPSES REANVNGRSN ASDGDSIVEP QMGMVFLSED 60 QAKNFYDEYA RRLGFTTRVC QFNRLKTDFL CDKVGLRRVS GESCDAMLRV ELKGQNKWVV 120 TKYVKEHSHS LVYPNKVHYQ RLHKHFAVTK KNVTENNQGV GIVPSGVMYV SVDGNRIPVE 180 MNHGAKRTRP DELDQTVKNT AFQSFSPRHC NQRRTLGRDA QNLLDYFKKM QAENPGFYYA 240 IQLDEDNRMA NVFWADARSR NAYSHFCDAV ILDTMYRVNQ CRVPFAPLTG VNHHDQTILF 300 GCALLLDESE ATFVWLFKTF LAAMNDRAPV SIMTDRDTVI KSAVAQVFPE TRHCINKWNV 360 LRGGQDRMAH VCHMYPNFQV ELYNCINLTD TVEEFETYWE IILDKYDLKK NDWLLSIYNI 420 RHQWVPVYFR DTFVAAISPN QEYECSFFDG YVNQQITLPL FFRQYERALE NSLEKEIEAD 480 FDTICATPPL RTPSPMEKQA ATVYTKKIFL KFQEELVETF VYTANRIDGD GVISTFRVAK 540 FEDDQKAYIV SLNISELKAN CSCQMFECSG ILCRHILTVF TVNNILTLPS HYILKRWTIN 600 AKCGAESAEQ VHDTESMAQR YNSLCREAIR YAEDGAVSQE AYNAVLGALK EGGKKVALAK 660 IKVTKVSPPN SLVSGAGYDD RRTSISASEM TPLLWPRQDE MTKRFNLNDT GSPARAVADL 720 NAQRMAPVSL HHDDGHADNT VILPCLKSMT WVMENKTSAP ENRVAVINLK LQDYSRTPSR 780 ESEVKFQLSR ITLEPMLKSM AYISEQLSAP ANRVAVINLK LQDTETTSGE SEVKFQVSRD 840 TLGAMLRSMA YIREQLSNTV SFLGLFSMYH LFYLSILKTF *

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence Send to blast

MNVEVIDVEE GKMHQQGGIA DDGDDEPSES REANVNGRSN ASDGDSIVEP QMGMVFLSED  60
QAKNFYDEYA RRLGFTTRVC QFNRLKTDFL CDKVGLRRVS GESCDAMLRV ELKGQNKWVV  120
TKYVKEHSHS LVYPNKVHYQ RLHKHFAVTK KNVTENNQGV GIVPSGVMYV SVDGNRIPVE  180
MNHGAKRTRP DELDQTVKNT AFQSFSPRHC NQRRTLGRDA QNLLDYFKKM QAENPGFYYA  240
IQLDEDNRMA NVFWADARSR NAYSHFCDAV ILDTMYRVNQ CRVPFAPLTG VNHHDQTILF  300
GCALLLDESE ATFVWLFKTF LAAMNDRAPV SIMTDRDTVI KSAVAQVFPE TRHCINKWNV  360
LRGGQDRMAH VCHMYPNFQV ELYNCINLTD TVEEFETYWE IILDKYDLKK NDWLLSIYNI  420
RHQWVPVYFR DTFVAAISPN QEYECSFFDG YVNQQITLPL FFRQYERALE NSLEKEIEAD  480
FDTICATPPL RTPSPMEKQA ATVYTKKIFL KFQEELVETF VYTANRIDGD GVISTFRVAK  540
FEDDQKAYIV SLNISELKAN CSCQMFECSG ILCRHILTVF TVNNILTLPS HYILKRWTIN  600
AKCGAESAEQ VHDTESMAQR YNSLCREAIR YAEDGAVSQE AYNAVLGALK EGGKKVALAK  660
IKVTKVSPPN SLVSGAGYDD RRTSISASEM TPLLWPRQDE MTKRFNLNDT GSPARAVADL  720
NAQRMAPVSL HHDDGHADNT VILPCLKSMT WVMENKTSAP ENRVAVINLK LQDYSRTPSR  780
ESEVKFQLSR ITLEPMLKSM AYISEQLSAP ANRVAVINLK LQDTETTSGE SEVKFQVSRD  840
TLGAMLRSMA YIREQLSNTV SFLGLFSMYH LFYLSILKTF *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016578018.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2G2ZDK9	0.0	A0A2G2ZDK9_CAPAN; Protein FAR1-RELATED SEQUENCE 3
STRING	XP_009776131.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]