PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g20440

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YC

Protein Properties

Length: 191aa MW: 20903.7 Da PI: 5.0138

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g20440	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	174.9	8.5e-55	1	102	4	102
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +fw++q ie+a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdivprd CA06g20440 1 MFWNYQrqeIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRD 99 6999887789***************************************************************************************** PP NF-YC 100 elk 102 e+k CA06g20440 100 EVK 102 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.35E-32	6	92	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.7E-37	12	84	IPR009072	Histone-fold
Pfam	PF00808	5.4E-21	20	83	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MFWNYQRQEI EQANDFKNHQ LPLARIKKIM KADEDVRMIS AEAPVLFAKA CELFILELTI 60 RSWLHAEENK RRTLQKNDIA AAITRTDIFD FLVDIVPRDE VKDEGVGLGL GPGIVGPTAS 120 GVPYYYPPLG QPAPGGVMLG RPAVPGVDPS MYVHPPPSQA WQSVWQTSEE HSYPSGGGSS 180 SGQGNVDGQM *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-55	6	98	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	76	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016578216.1	1e-141	PREDICTED: nuclear transcription factor Y subunit C-1-like isoform X2
Swissprot	Q9SMP0	1e-97	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A2G2WL60	1e-140	A0A2G2WL60_CAPBA; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A2G3CA04	1e-140	A0A2G3CA04_CAPCH; Nuclear transcription factor Y subunit C-4
STRING	Solyc06g072040.1.1	1e-125	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4087	21	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	4e-95	nuclear factor Y, subunit C1

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]