PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g20160
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 670aa    MW: 75025.4 Da    PI: 4.668
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g20160genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH391.4e-12325347426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 e C ++++tG CkyG +CkF+H+
  CA06g20160 325 EDCAYYMKTGACKYGVNCKFNHP 347
                 89********************8 PP
2zf-CCCH28.62.5e-09373395527
                 --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                 +C++++  G CkyG+ Ck++H++
  CA06g20160 373 ECKYYLTEGGCKYGNACKYNHSR 395
                 7********************95 PP
3zf-CCCH40.35.3e-13416440226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ C++++rtG CkyG++C+F+H+
  CA06g20160 416 GEKDCPYYMRTGSCKYGSNCRFHHP 440
                 7889********************9 PP
4zf-CCCH27.26.5e-09553579127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C++f +tG Cky ++CkF+H++
  CA06g20160 553 PGQPDCSYFIKTGDCKYKANCKFHHPK 579
                 5789*********************96 PP
5zf-CCCH31.43.2e-10599625127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C+f++r+G+Ck+G+ CkF H++
  CA06g20160 599 PGQPVCSFYSRYGICKFGPGCKFDHPE 625
                 5789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.83E-6319351IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455321349IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5321348IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-10325347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5327346IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.648368396IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016368395IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5372396IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-7373395IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4374395IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718414442IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-7414441IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10416440IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-6416442IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5420439IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-4552579IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.713552580IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5554579IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.216598626IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-6598625IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7600625IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5601627IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MEGIESQVYM QHQPTTLDKH YLGFHHPQPP DGTSSFSSEQ DLRSPEENEV DDELLLQIIV  60
EEVRDLVLNQ AVSEEKSKSE AVAAKSVNQD EIAVQIINEE VRNLVLNQAV SEESNKAKPV  120
NEEELAVQII NEELRKLVLN QSFSEERARE GDINESVKEV SENVKGGEVV SKEWGADQYE  180
DDEHSWRENV NVVDVGNEEG GEAGSKEWGV DDQYEDGDCS CREHENVVGV EDEKGSEAGS  240
KKWGVDHYED GDYSWSEDAN VIDVENEAGL KEWGFNCYED GDHSWRRNEN VVDVENEKDG  300
EAGSKLWGYN ANGRGLIYPL RPDAEDCAYY MKTGACKYGV NCKFNHPSPR RNQWSMEKGK  360
KKEESEERVG QIECKYYLTE GGCKYGNACK YNHSRRKDAI SPVLDYNFLG LPIRPGEKDC  420
PYYMRTGSCK YGSNCRFHHP DPTTAAGNNR SFGYNNSGSA PVQSASYSPV SSWSSPRALN  480
ETSPFLPVVY TTSKGIPPPG PQWNSFLTTV CPTLEKSLPT PPAFTMDDPA TKTNFYPRPQ  540
QPWLVEEYYP ERPGQPDCSY FIKTGDCKYK ANCKFHHPKT QNFKTNLSIL SNKGLPLRPG  600
QPVCSFYSRY GICKFGPGCK FDHPENNDNV ASPPAFGFYQ PPFGNSATTD GSRMARKGNG  660
NGSLVHQSF*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260202e-86AC226020.1 Solanum lycopersicum chromosome 6 clone C06SLm0127C05, complete sequence.
GenBankHG9755182e-86HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016578233.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X1
TrEMBLA0A1U8HAT10.0A0A1U8HAT1_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZCI10.0A0A2G2ZCI1_CAPAN; zinc finger CCCH domain-containing protein 67-like isoform X1
STRINGPGSC0003DMT4000696260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.13e-96C3H family protein