PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g17260

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

FAR1

Protein Properties

Length: 738aa MW: 84886 Da PI: 5.451

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g17260	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71	2.7e-22	129	212	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leHnH + CA06g17260 129 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHLF 212 69**************************************99888.....8999*****************************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.7E-20	129	212	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-26	331	417	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.31	618	654	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.7E-5	625	652	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-5	629	656	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence Send to blast
MEEGLGISEQ LPEDEGGDNE AVGVEVFDIT CNGIESDSDQ VRNIETTAGQ ILEFESHETE 60 RNCEHVLNFE SGDPRDNSHQ LLELHSDGLE DPRCGNTTIL DGHTGSSLGK SCPPLAVGME 120 FESYEDAYNY YNCYAKELGF AIRVKSSWTK RNSKEKRGAV LCCNCEGFKT MKEANSRRKE 180 TRTGCLAMIR LRLVESNRWR VDEVKLEHNH LFDPERMQNS KSHKKMDAGV KRKLEPAVDV 240 EVCTIKLYRT PAVETPGYGN SDERVSSQIY GSTRLNLKEG DTQVIYSFFS RMQLMKPNFF 300 YIMDLNDEGY LKNVFWIESR SRAAYAYFGD VVVVDNTCLS KKYDIPLLAF FGLNHHNQTL 360 LLGCSLLADE SFETYVWLLR AWLSCMSGRP PQTIITDRCK ALQNAVSEVF PRAQHRLNLS 420 IILDSIVDTV GEMGGSEVFH EVLYNTVYSS LKVDEFEVAW EEMTQQFGCR GYGWLQSLYE 480 DRERWVPIYM KDTFLAGISI DDQHGEFMRP FFDGFVHKQT NLREFFDIYD FVLQKMHQKE 540 VLCDTESREF SPDLRTRCSY ELQLSKLYTK EIFLKFQDEM VLMSNCSGIA QIHVNGPIIT 600 YIVKERGVQG ETRGARDFEV TYDKLGVEVR CMCNCFNFKG YLCRHALSVL NYNGIEEIPN 660 HYILTRWRKN FKHLYASELG SSNIDISNPV QRFDHLHRRA MQVVDEGMTS QDHYMVAQQA 720 FKESLIKFHL AADKHVS*

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence Send to blast

MEEGLGISEQ LPEDEGGDNE AVGVEVFDIT CNGIESDSDQ VRNIETTAGQ ILEFESHETE  60
RNCEHVLNFE SGDPRDNSHQ LLELHSDGLE DPRCGNTTIL DGHTGSSLGK SCPPLAVGME  120
FESYEDAYNY YNCYAKELGF AIRVKSSWTK RNSKEKRGAV LCCNCEGFKT MKEANSRRKE  180
TRTGCLAMIR LRLVESNRWR VDEVKLEHNH LFDPERMQNS KSHKKMDAGV KRKLEPAVDV  240
EVCTIKLYRT PAVETPGYGN SDERVSSQIY GSTRLNLKEG DTQVIYSFFS RMQLMKPNFF  300
YIMDLNDEGY LKNVFWIESR SRAAYAYFGD VVVVDNTCLS KKYDIPLLAF FGLNHHNQTL  360
LLGCSLLADE SFETYVWLLR AWLSCMSGRP PQTIITDRCK ALQNAVSEVF PRAQHRLNLS  420
IILDSIVDTV GEMGGSEVFH EVLYNTVYSS LKVDEFEVAW EEMTQQFGCR GYGWLQSLYE  480
DRERWVPIYM KDTFLAGISI DDQHGEFMRP FFDGFVHKQT NLREFFDIYD FVLQKMHQKE  540
VLCDTESREF SPDLRTRCSY ELQLSKLYTK EIFLKFQDEM VLMSNCSGIA QIHVNGPIIT  600
YIVKERGVQG ETRGARDFEV TYDKLGVEVR CMCNCFNFKG YLCRHALSVL NYNGIEEIPN  660
HYILTRWRKN FKHLYASELG SSNIDISNPV QRFDHLHRRA MQVVDEGMTS QDHYMVAQQA  720
FKESLIKFHL AADKHVS*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006356225.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A2G2ZBV0	0.0	A0A2G2ZBV0_CAPAN; Protein FAR1-RELATED SEQUENCE 8
STRING	Solyc06g068210.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]