PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g01400
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 362aa    MW: 39547.5 Da    PI: 7.3924
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g01400genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.97e-134469227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                +t++C+f++rtG C yG++C+++H+p
  CA06g01400 44 GTPNCSFYMRTGSCGYGAQCRYNHPP 69
                79**********************97 PP
2zf-CCCH37.44.2e-1290114327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C++++rt tCkyG++CkF+H++
  CA06g01400  90 EPICQYYLRTATCKYGASCKFHHPR 114
                 799********************96 PP
3zf-CCCH37.44.1e-12135159226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++ C+++++tG+Ck+G +CkF+H+
  CA06g01400 135 EERVCSYYLKTGQCKFGLTCKFHHP 159
                 5789********************8 PP
4zf-CCCH40.74e-13264289126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ++++ C+++++tG Ck+G++CkF+H+
  CA06g01400 264 PGQRVCQYYMQTGDCKFGSSCKFHHP 289
                 57899********************8 PP
5zf-CCCH37.15.3e-12311336227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 +  +C+ff++ G+Ck+G++CkF H++
  CA06g01400 311 GVQPCSFFMQRGFCKFGGTCKFDHPM 336
                 6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6154270IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-74269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-64470IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-104469IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-54868IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-587114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.18387115IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-990114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-690115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-592114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6133160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671133161IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-5133160IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9136159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5137158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.741263291IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-7263290IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10265289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-6265291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-6267289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596309337IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-7309336IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9311336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6311338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-5313334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEMYGGSQSD QQPEWVPVGP ETGLEESMRR LGLWSNEGYP ERSGTPNCSF YMRTGSCGYG  60
AQCRYNHPPD LTSVGVVPLE RSEYPERIGE PICQYYLRTA TCKYGASCKF HHPRNLGGSL  120
SNVPLNEYGY PLRPEERVCS YYLKTGQCKF GLTCKFHHPN PAEVSAPVTA RPFYPTVPSL  180
PAPLEETRPQ LLPSSYVPGT YGPVLLHPGL ATVQNWSTYS APGSLALSQL ASSTPAIAAP  240
YSSLHLADGP SSSALQEKHF PERPGQRVCQ YYMQTGDCKF GSSCKFHHPA DWSPSKTDCA  300
VNSLGLPLRP GVQPCSFFMQ RGFCKFGGTC KFDHPMGTVR DSSSASSLPD IPNAPYMSSP  360
E*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755182e-50HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016576095.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
RefseqXP_016576096.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W911e-141C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1U8GXY20.0A0A1U8GXY2_CAPAN; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1U8GYB60.0A0A1U8GYB6_CAPAN; zinc finger CCCH domain-containing protein 32-like
TrEMBLA0A2G3C3W20.0A0A2G3C3W2_CAPCH; Zinc finger CCCH domain-containing protein 32
STRINGPGSC0003DMT4000136470.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-144C3H family protein