PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g32630

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

FAR1

Protein Properties

Length: 688aa MW: 79864.9 Da PI: 7.6629

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g32630	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.7	1.7e-22	81	164	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+evGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ leHnH+l CA03g32630 81 NYYNCYAREVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMMRMRMVDSKRWRVLEVTLEHNHSL 164 69***************************************9988.....99*******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-19	81	164	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-25	283	376	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.829	570	606	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	581	608	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence Send to blast
MEEASLDSVQ DITVQDRRKF QEIESDGLDD QNSDQIESDE LFVQNGAEME SDDQNCVTDG 60 QKEFVAPAVG MEFESYDDAY NYYNCYAREV GFRVRVKNSW FKRNSREKYG AVLCCSSQGF 120 KRIKDVNRLR KETRTGCPAM MRMRMVDSKR WRVLEVTLEH NHSLGAKVYK SIKKTGVGNK 180 MKLDSNCNAE VRTIKLYRAL VIDAGANRNA NFSASRCKSS SDCHNKLNLR KGDAQAMYNY 240 FCRMQLTNPN FFYLMDLNDE GQLRNVFWID ARSRAAFAYF VDVIYIDNLY LSNKYEIPLV 300 AFVGTNHHGQ SMLLACGLLA GETKASYAWL FKAWLTCSLG RFPQTIITER CNVLETAISE 360 VFPRSLHRFA LSHIMRKVPE KLGGLRNYDV IRKALIKTIY ESLKPFDFEA AWRFMIQRFG 420 VGDHEWLCSL YNDRAKWAPV YLKDTFFAGM ATARSNETLT AFFDKYVHKQ TPLKEFLDKY 480 ELALQKKFKE EALADVESRN SNPELKTRCS FELQLSNAYT REIFKRFQLE VEEMYSCFST 540 TQLHVDGQVI IFLVKERVLE EGNRREIRDY EVLYNKAAAE VRCICSCFNF YGYLCRHALC 600 VLNFNGVEEI PSKYILSRWK KDYKRLCASD LESSSTESTE QVQWFNQLYR SALQVVEEGM 660 ISLDHYKVAL NAFEESLSRV HHIEEKT*

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence Send to blast

MEEASLDSVQ DITVQDRRKF QEIESDGLDD QNSDQIESDE LFVQNGAEME SDDQNCVTDG  60
QKEFVAPAVG MEFESYDDAY NYYNCYAREV GFRVRVKNSW FKRNSREKYG AVLCCSSQGF  120
KRIKDVNRLR KETRTGCPAM MRMRMVDSKR WRVLEVTLEH NHSLGAKVYK SIKKTGVGNK  180
MKLDSNCNAE VRTIKLYRAL VIDAGANRNA NFSASRCKSS SDCHNKLNLR KGDAQAMYNY  240
FCRMQLTNPN FFYLMDLNDE GQLRNVFWID ARSRAAFAYF VDVIYIDNLY LSNKYEIPLV  300
AFVGTNHHGQ SMLLACGLLA GETKASYAWL FKAWLTCSLG RFPQTIITER CNVLETAISE  360
VFPRSLHRFA LSHIMRKVPE KLGGLRNYDV IRKALIKTIY ESLKPFDFEA AWRFMIQRFG  420
VGDHEWLCSL YNDRAKWAPV YLKDTFFAGM ATARSNETLT AFFDKYVHKQ TPLKEFLDKY  480
ELALQKKFKE EALADVESRN SNPELKTRCS FELQLSNAYT REIFKRFQLE VEEMYSCFST  540
TQLHVDGQVI IFLVKERVLE EGNRREIRDY EVLYNKAAAE VRCICSCFNF YGYLCRHALC  600
VLNFNGVEEI PSKYILSRWK KDYKRLCASD LESSSTESTE QVQWFNQLYR SALQVVEEGM  660
ISLDHYKVAL NAFEESLSRV HHIEEKT*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016562966.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_016562967.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_016562968.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1U8FV02	0.0	A0A1U8FV02_CAPAN; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2G3A2N7	0.0	A0A2G3A2N7_CAPAN; protein FAR1-RELATED SEQUENCE 6
STRING	XP_009620425.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]