PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g25220
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 503aa    MW: 55971.1 Da    PI: 5.0237
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g25220genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-12168189526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C+++++tG Ck+G++CkF+H+
  CA03g25220 168 DCPYYMKTGMCKFGSNCKFNHP 189
                 7********************8 PP
2zf-CCCH32.41.6e-10214238327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 + +C++++ +G CkyG  CkF+H++
  CA03g25220 214 QIECKYYLTSGGCKYGKACKFIHSR 238
                 568********************95 PP
3zf-CCCH41.52.2e-13258283126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +++++C++++rtG CkyG++C+F+H+
  CA03g25220 258 PGERECPYYMRTGSCKYGSNCRFHHP 283
                 5789*********************9 PP
4zf-CCCH28.52.6e-09395421127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C++f ++G Cky ++CkF+H++
  CA03g25220 395 PGQPECSYFIKFGDCKYRSNCKFHHPR 421
                 5789*********************96 PP
5zf-CCCH36.95.9e-12442467227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++ +C+f++r+G+Ck+G+ CkF H++
  CA03g25220 442 DQTICSFYSRYGICKFGPACKFDHPE 467
                 5789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.0E-6163190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6163190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723163191IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9168189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5169188IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5211238IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802211239IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-8215238IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6216240IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-7217239IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-7257284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.483257285IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-11259283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6260284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5263282IPR000571Zinc finger, CCCH-type
SMARTSM003560.019394421IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807394422IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5398423IPR000571Zinc finger, CCCH-type
PfamPF146080.72400420No hitNo description
SMARTSM003563.5E-6440467IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.319440468IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5441468IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9443467IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4445467IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEEPIQQHQN QNQSEQLGLG LGLESRDSGT SSLPSDPNSQ NPNQNQPKSD DHDDDEMTMQ  60
VICEELQNLI LSRALDEEKG SEDRGESGRI EVGNVEGNDD EGWGYEESGE FGYDQYDDEG  120
GDGNRSGNED DGGNENGYEG DLKEVGGFNG NRINTRKFTY PLRPDAQDCP YYMKTGMCKF  180
GSNCKFNHPS RGKFQQGTKE KGKQREESQE RPGQIECKYY LTSGGCKYGK ACKFIHSREK  240
GSISPIVEFN FLGLPLRPGE RECPYYMRTG SCKYGSNCRF HHPDPITVAG ADPSSGYNNA  300
GAFPVQASSH SAESSWSPPR SLNDTASYAP MVYPPSQGIP SPNTDWNGYQ APVYPTSEKR  360
LPTPPAFSMN NPTTKTNFYP RSQQPLLIEE YPERPGQPEC SYFIKFGDCK YRSNCKFHHP  420
RSRISKANSS TLSDKGLPLR PDQTICSFYS RYGICKFGPA CKFDHPENYV GGSAPSAESG  480
FDQHQQSQMS LGWQGRQLEV DH*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-101HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563762.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1
SwissprotQ9STM41e-115C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A1U8FX520.0A0A1U8FX52_CAPAN; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A2G2ZW180.0A0A2G2ZW18_CAPAN; zinc finger CCCH domain-containing protein 67 isoform X1
STRINGPGSC0003DMT4000392290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-112C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]