PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g24070

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YC

Protein Properties

Length: 57aa MW: 6811.76 Da PI: 4.4352

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g24070	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	38	3.5e-12	1	45	56	100
NF-YC 56 leltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 +e+ + sw h e++k rtl+k+di+ a+ +dif f+ divp e CA03g24070 1 MEFNVHSWFHVENKKYRTLQKNDISGAIRWSDIFYFICDIVPIYE 45 68899************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.2E-6	6	42	IPR009072	Histone-fold
SuperFamily	SSF47113	5.58E-6	6	51	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 57 aa Download sequence Send to blast
MEFNVHSWFH VENKKYRTLQ KNDISGAIRW SDIFYFICDI VPIYEINEEA MVVELE*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016566807.1	4e-19	PREDICTED: nuclear transcription factor Y subunit C-4-like
TrEMBL	A0A2G3A0Y5	1e-33	A0A2G3A0Y5_CAPAN; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	9e-16	nuclear factor Y, subunit C1