PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g08690
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 431aa    MW: 46352.9 Da    PI: 9.0057
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g08690genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.68.5e-134671126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                ++ + C++++rtG C yG++C+F+H+
  CA03g08690 46 PGVPDCSYYMRTGSCGYGANCRFNHP 71
                5789*********************8 PP
2zf-CCCH35.91.3e-1192117227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 +++ C+++++t tCk+G++CkF H++
  CA03g08690  92 GEPTCQYYLKTRTCKFGASCKFDHPR 117
                 5789********************96 PP
3zf-CCCH35.12.2e-11139163327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 + +C+++++tG+Ck+G +CkF+H++
  CA03g08690 139 ETECSYYLKTGHCKFGITCKFHHPQ 163
                 679********************97 PP
4zf-CCCH37.15.1e-12294319227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++ +C+++ +tG Ck+G++CkF+H+p
  CA03g08690 294 GQTICQYYVKTGDCKFGSSCKFHHPP 319
                 6789********************97 PP
5zf-CCCH28.13.6e-09340365227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 +  +C+f++  G+Ck+G  CkF H++
  CA03g08690 340 GVQPCSFYLVKGFCKFGRACKFDHPM 365
                 6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.1E-74572IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4554573IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-104771IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-64973IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-55171IPR000571Zinc finger, CCCH-type
SMARTSM003560.01990117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.00490118IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-993117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-593118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-496116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324136164IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5136163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6138164IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-9139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4142162IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-7292319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.117292320IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9294319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6294320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5297318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587338366IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5338365IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6340365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5341367IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MELYGRSTGS NGSQSDHQSE WVAVEPETGS MQKLGLFGRE IYPERPGVPD CSYYMRTGSC  60
GYGANCRFNH PSDRTYGGKM KLGGVEFPER MGEPTCQYYL KTRTCKFGAS CKFDHPRNLG  120
GTLINIPLNT YGYPLRTGET ECSYYLKTGH CKFGITCKFH HPQPAGISVP APARPFYPTV  180
QSLPAPPEYN SGSTGLRVAR PPPLLPGSYV PSAYGPVLLH PGVVTIQNWS PYSGPVSPAL  240
SPGATPSAGM ASIYGMSQLA SSTHAFAGPY SPSALAASPS SKTQKEKSFP ERPGQTICQY  300
YVKTGDCKFG SSCKFHHPPD WIASKTNCAI GPSGLPLRPG VQPCSFYLVK GFCKFGRACK  360
FDHPMGTVQY SSSVSSLPDL PIAPYMLRSS FTLTPMLLPE LHAGFVSGSK VDASLSRAPS  420
SMKVQLVQLT *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-120HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016565710.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W911e-164C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1U8G3I10.0A0A1U8G3I1_CAPAN; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2G2ZWB10.0A0A2G2ZWB1_CAPAN; zinc finger CCCH domain-containing protein 32-like
TrEMBLA0A2G3CTU80.0A0A2G3CTU8_CAPCH; Zinc finger CCCH domain-containing protein 32
STRINGSolyc09g074640.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-163C3H family protein