PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g34490
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 311aa    MW: 35062.1 Da    PI: 6.0649
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g34490genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-19101151256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p +   r+r++lg+++ ae Aa a+++a+ kl+ge
  CA01g34490 101 LYRGVRQRH-WGKWVAEIRLPQN---RTRVWLGTYDNAEAAAYAYDRAAYKLRGE 151
                 59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.00E-17100160No hitNo description
SuperFamilySSF541712.68E-22101159IPR016177DNA-binding domain
SMARTSM003801.2E-35101164IPR001471AP2/ERF domain
PROSITE profilePS5103222.879101158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-30101159IPR001471AP2/ERF domain
PfamPF008475.9E-13102151IPR001471AP2/ERF domain
PRINTSPR003671.7E-12102113IPR001471AP2/ERF domain
PRINTSPR003671.7E-12140160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSTIQENMSY TYDEAAQIRS SLSQILLTSS TNTLDSIFSH CQEPNNQMST TTSHVLEPLG  60
SSVYLRQKNL LQKFWEQNRT TCSTQTPLQE SLYVSPNKKK LYRGVRQRHW GKWVAEIRLP  120
QNRTRVWLGT YDNAEAAAYA YDRAAYKLRG EYARLNFPNL RDPSELGFGD SAKMNALKNS  180
VDAKIQAICQ KVKRERAKKG VKKIVESEKK VAKTVDLDSS CSSSSLVGSE SWSHSDVISQ  240
SSSDDGFWKS ENSPSSVLGD FPTGLENDDG YITSITHQFE SPMMESEFED CSLERMPSFD  300
PELIWEVLAN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2098158263ATERF1
3gcc_A2e-2098158263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552337.10.0PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W29e-74ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A2G3APH70.0A0A2G3APH7_CAPAN; Ethylene-responsive transcription factor
STRINGPGSC0003DMT4000149531e-158(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.13e-62ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]