PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g01170
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 304aa    MW: 34156.4 Da    PI: 8.5404
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g01170genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-18110160256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  CA01g01170 110 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 160
                 59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.13E-16109169No hitNo description
SuperFamilySSF541713.33E-22110167IPR016177DNA-binding domain
SMARTSM003801.5E-35110173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-30110168IPR001471AP2/ERF domain
PROSITE profilePS5103223.235110167IPR001471AP2/ERF domain
PRINTSPR003674.9E-10111122IPR001471AP2/ERF domain
PfamPF008471.2E-12111160IPR001471AP2/ERF domain
PRINTSPR003674.9E-10133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDKFQENNTM SSIYDEGARI RSSLSQLILT SGTNTFDTIF SHYQETNQMA STSPVFEPLG  60
SSVYLRQRDL LHKFCQENIA NIPLPTTSKT SPFRNSLYTQ GYNFQEKKKL YRGVRQRHWG  120
KWVAEIRLPQ NRMRVWLGTY ETAEAAAYAY DRAAYKLRGE YARLNFPNVR DPSKLGFGDG  180
ERMNAVKNAV DAKIQAICQK VKREKAKKAA KKKSENESKV KETMDSSSST TTTTTTTSSL  240
VGGCGDVISP SVSEDGLWKS EDSTCSVFGD CLKEPLMESE FDSCSLARMP SFDPELIWEV  300
LAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-21109167160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-21107167263ATERF1
3gcc_A6e-21107167263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555807.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W21e-69ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A2G3ADG60.0A0A2G3ADG6_CAPAN; Ethylene-responsive transcription factor
STRINGPGSC0003DMT4000316851e-168(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-59ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]