PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g00740

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 999aa MW: 109764 Da PI: 6.079

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g00740	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.2e-29	598	649	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ CA01g00740 598 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 649 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.609	588	669	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-26	601	649	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.89E-23	902	989	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.2E-26	903	984	No hit	No description
PROSITE profile	PS51745	23.955	903	985	IPR000270	PB1 domain
SMART	SM00666	3.9E-24	903	985	IPR000270	PB1 domain
CDD	cd06407	6.47E-38	904	984	No hit	No description
Pfam	PF00564	2.0E-17	904	984	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence Send to blast
MNLIFRPPPP TAQHQPPHNQ RESSASLMMM DLDLDLDSSW SFDQIFAAAA ASNPMFAAAE 60 QPSSPLWAFS DENEDKPTTT NGNAIAGAGV GSLRISSYPR FLTTYISEHE AAPETLSVTD 120 DKKRIPPPNM GLNPLDYQDG SCIIKERMTQ ALRNLKESTG ERVLAQVWAP VKNGSRYVLT 180 TSGQPFVLDP DCNGLHQYRM VSLMYMFSVD GETDGVLGLP GRVYRKKLPE WTPNVQYYSS 240 KEFPRLNHAL HYNVRGTLAL PVFEPSGQSC VGVLELIMTS QKINYAPEVD KVCKALEAVN 300 LKSSEILDYP NHQICNEGRQ NALVEILEIL TAVCETYKLP LAQTWVPCRH RSVLADGGGF 360 KKSCSSFDGS CMGQVCMSTT DVAFYVVDAH MWGFREACAE HHLQKGQGVA GRAYASQKSC 420 FCEDIGQFCK TEYPLVHYAR LFGLSRCFAI CLRSTHTGND DYILEFFLPP NDGDYTDQFA 480 LLNSLLLTMK QHFRSLRVAS GEELEHDWGS VEIIKASAEE KLGSRFESVP TTKSLPQPAS 540 VANGRTHPDL MEEQQSPVAL NGAKGAEGVN GTAEAHNHTS FSENKPTGKK SERKRGKAEK 600 TISLEVLQQY FAGSLKDAAK SLGVCPTTMK RICRQHGISR WPSRKINKVN RSLSKLKRVI 660 ESVQGADGTF SLTSLAPNSL PVAVGSISWP AGMTDSPCKA SEYHEEKNEF SNHGTPASHE 720 EAEPSNQMLG SRIIGNEELS PKQNGFVREG SHRSRTGSFS REESTGTPTS HGSCQGSPCA 780 ANESSPQNEL VNSPTQESAM KVEGSLEPAR QATGETNLST AFLMPGLYIP EHNQQSFKGM 840 LVEDAGSSHD LRNLCPAGDV MFDERVPEHS WTNPPCSNGS AKDQVPLPAE KMPQFSTRPE 900 VTSVTIKATY REDIIRFRLC LSSGIFKLKE EVAKRLKLEV GTFDIKYLDD DHEWVLIACD 960 ADLQECVDIS RSSGSNVVRL LVHDIMPNLG SSCESSGE*

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence Send to blast

MNLIFRPPPP TAQHQPPHNQ RESSASLMMM DLDLDLDSSW SFDQIFAAAA ASNPMFAAAE  60
QPSSPLWAFS DENEDKPTTT NGNAIAGAGV GSLRISSYPR FLTTYISEHE AAPETLSVTD  120
DKKRIPPPNM GLNPLDYQDG SCIIKERMTQ ALRNLKESTG ERVLAQVWAP VKNGSRYVLT  180
TSGQPFVLDP DCNGLHQYRM VSLMYMFSVD GETDGVLGLP GRVYRKKLPE WTPNVQYYSS  240
KEFPRLNHAL HYNVRGTLAL PVFEPSGQSC VGVLELIMTS QKINYAPEVD KVCKALEAVN  300
LKSSEILDYP NHQICNEGRQ NALVEILEIL TAVCETYKLP LAQTWVPCRH RSVLADGGGF  360
KKSCSSFDGS CMGQVCMSTT DVAFYVVDAH MWGFREACAE HHLQKGQGVA GRAYASQKSC  420
FCEDIGQFCK TEYPLVHYAR LFGLSRCFAI CLRSTHTGND DYILEFFLPP NDGDYTDQFA  480
LLNSLLLTMK QHFRSLRVAS GEELEHDWGS VEIIKASAEE KLGSRFESVP TTKSLPQPAS  540
VANGRTHPDL MEEQQSPVAL NGAKGAEGVN GTAEAHNHTS FSENKPTGKK SERKRGKAEK  600
TISLEVLQQY FAGSLKDAAK SLGVCPTTMK RICRQHGISR WPSRKINKVN RSLSKLKRVI  660
ESVQGADGTF SLTSLAPNSL PVAVGSISWP AGMTDSPCKA SEYHEEKNEF SNHGTPASHE  720
EAEPSNQMLG SRIIGNEELS PKQNGFVREG SHRSRTGSFS REESTGTPTS HGSCQGSPCA  780
ANESSPQNEL VNSPTQESAM KVEGSLEPAR QATGETNLST AFLMPGLYIP EHNQQSFKGM  840
LVEDAGSSHD LRNLCPAGDV MFDERVPEHS WTNPPCSNGS AKDQVPLPAE KMPQFSTRPE  900
VTSVTIKATY REDIIRFRLC LSSGIFKLKE EVAKRLKLEV GTFDIKYLDD DHEWVLIACD  960
ADLQECVDIS RSSGSNVVRL LVHDIMPNLG SSCESSGE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016565714.1	0.0	PREDICTED: protein NLP6-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2G3DAT8	0.0	A0A2G3DAT8_CAPCH; Protein NLP7
STRING	PGSC0003DMT400031945	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]