PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1491.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family SRS
Protein Properties Length: 330aa    MW: 35065.1 Da    PI: 6.5739
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1491.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702226.16.8e-70962542154
               DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkq 83 
                          rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s     +         ++ +kr+r++  +  
  Bostr.7867s1491.1.p  96 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSgsggtaggGSSIPKRHRDT--TLP 183
                          67899*****************************************************999887777899988888889999986..888 PP

               DUF702  84 salsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                           ++ss++l+s ++  e+  +s+P evss+a+frcv++s+vddg+ ++aYqt+v+igGh+fkGiLydqG+e+
  Bostr.7867s1491.1.p 184 GTSSSSRLPSDSAGLEMGEASFPGEVSSDALFRCVKMSGVDDGDGQYAYQTTVNIGGHIFKGILYDQGPEN 254
                          899999***************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.6E-6399253IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.3E-27101143IPR006510Zinc finger, lateral root primordium type 1
Gene3DG3DSA:2.30.27.102.0E-4130189No hitNo description
TIGRFAMsTIGR016241.1E-29205252IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAGIFSLGGN NNNNGDEDEE ENQQQQKTNW VWYRSNANTN NINPSSSQQI WQIPPEQMLM  60
HHHPHPEQQQ QQQQQQSLDL YPGHQINVSD LATSSRSITI SCRDCGNQAK KDCTHMRCRT  120
CCKSRGFDCS THVRSTWIPV ARRRERQQQL HMSTSGGGGG SGSGGTAGGG SSIPKRHRDT  180
TLPGTSSSSR LPSDSAGLEM GEASFPGEVS SDALFRCVKM SGVDDGDGQY AYQTTVNIGG  240
HIFKGILYDQ GPENSYMSGG SGGSDHQSSS AGGGGGGNPF NPPVVADGGG GGSSAMFVDP  300
NSGGYYASNM TTSVFMPPGT QFYQNPPRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s1491.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0221411e-164AL022141.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E13 (ESSAII project).
GenBankAL1615891e-164AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85.
GenBankCP0026871e-164CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446810.10.0PREDICTED: protein SHI RELATED SEQUENCE 2-like
SwissprotO655171e-172SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBLR0F6A61e-179R0F6A6_9BRAS; Uncharacterized protein
STRINGBostr.7867s1491.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136481727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36260.11e-149Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]