PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.3288s0204.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

SRS

Protein Properties

Length: 345aa MW: 38505.9 Da PI: 7.1523

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.3288s0204.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	228.8	9.7e-71	115	279	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.........kskk 82 r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++++s++++++kr re + Bostr.3288s0204.1.p 115 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSTSSRETQNTKRLREAsggdhnddhSGGG 204 7899**********************************************************99888888888877777776666677 PP DUF702 83 qsalsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154 sal++t++ +a+s++ le+s+ lP+ev+s+avfrcvrvss+++ +++e+aYqtav+igGhvfkGiLydqG+++ Bostr.3288s0204.1.p 205 GSALANTRVMNANSNSGLEVSQhLPPEVNSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 279 899**********998876***************98535567*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.4E-64	118	278	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.1E-28	120	162	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.5E-26	227	277	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MAGFFYLGGR DNNNKQDHHQ VDKDHHHQDK SNYLYLYKDE IYNNNKGFEI WPPQYFQQQE 60 HQQQPQQQHA STPANFYSFG MVPSGSSSNN NNNRSRSLYF NVVSDHEPGG FTVTRQGGMN 120 CQDCGNQAKK DCPHMRCRTC CKSRGFHCQT HVKSTWVPAA KRRERLAQLA SLQHHSTSSR 180 ETQNTKRLRE ASGGDHNDDH SGGGGSALAN TRVMNANSNS GLEVSQHLPP EVNSPAVFRC 240 VRVSSIEEDE DDQEYAYQTA VNIGGHVFKG ILYDQGPDQN HHHHHHDHLN LLASTATTTN 300 VEETATKTVA GNNNNGLMLD SSSLYPAQLN SFIAGTPFFT PPRS*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MAGFFYLGGR DNNNKQDHHQ VDKDHHHQDK SNYLYLYKDE IYNNNKGFEI WPPQYFQQQE  60
HQQQPQQQHA STPANFYSFG MVPSGSSSNN NNNRSRSLYF NVVSDHEPGG FTVTRQGGMN  120
CQDCGNQAKK DCPHMRCRTC CKSRGFHCQT HVKSTWVPAA KRRERLAQLA SLQHHSTSSR  180
ETQNTKRLRE ASGGDHNDDH SGGGGSALAN TRVMNANSNS GLEVSQHLPP EVNSPAVFRC  240
VRVSSIEEDE DDQEYAYQTA VNIGGHVFKG ILYDQGPDQN HHHHHHDHLN LLASTATTTN  300
VEETATKTVA GNNNNGLMLD SSSLYPAQLN SFIAGTPFFT PPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.3288s0204.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY800620	0.0	AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds.
GenBank	AY924730	0.0	AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_177684.1	0.0	SHI-related sequence 5
Swissprot	Q9LQZ5	0.0	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A178W9B5	0.0	A0A178W9B5_ARATH; SRS5
STRING	Bostr.3288s0204.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-162	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Bostr.3288s0204.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]