PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.13671s0206.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 265aa MW: 29971.1 Da PI: 8.21

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.13671s0206.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.4	3.5e-15	75	127	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +r++h+ +Er+RR++ s f +Lr llP+ ++K s ++ +e+Av+YIk+Lq Bostr.13671s0206.1.p 75 KRANHKDIERQRRQEATSLFKNLRNLLPSqY---IKGKRSSSDHVEEAVNYIKDLQ 127 79*************************66...*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.25E-11	72	131	No hit	No description
SuperFamily	SSF47459	8.24E-15	72	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.916	74	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-12	75	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-11	75	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0011	80	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MDFADSSLFT PDFAYENDFD FSSLITPSTL ISFQEPNPCN PIIHCAGIQN DGRQKVCETT 60 ITSEIRKGDD VPKNKRANHK DIERQRRQEA TSLFKNLRNL LPSQYIKGKR SSSDHVEEAV 120 NYIKDLQKKI KEISEKRDRI KRTITHRSST SKCSKRSLAS STSSPSSTCS CVGDTHMAVV 180 VRPCLIGLEI VVSCCFRHES FLSSVLQLLA QEQCLNVVSC ISTRLPQRFT HTIVSEVEEG 240 IEIYFSEIHE KLMKMGRSSY AYLY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	86	KRANHKDIERQRR
2	126	141	QKKIKEISEKRDRIKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.13671s0206.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA). {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC025416	4e-94	AC025416.4 Genomic sequence for Arabidopsis thaliana BAC F5O11 from chromosome I, complete sequence.
GenBank	AC025417	4e-94	AC025417.4 Genomic sequence for Arabidopsis thaliana BAC T12C24 from chromosome I, complete sequence.
GenBank	CP002684	4e-94	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010480445.2	1e-159	PREDICTED: transcription factor bHLH55-like
Swissprot	Q9LN95	1e-142	BH055_ARATH; Transcription factor bHLH55
TrEMBL	R0I2Y4	1e-143	R0I2Y4_9BRAS; Uncharacterized protein
STRING	Bostr.13671s0206.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6228	18	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12540.1	1e-133	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.13671s0206.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Wisman E, et al. Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes. Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7 [PMID:9770503]