![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.13671s0205.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 178aa MW: 20131.8 Da PI: 5.3478 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.6 | 0.00013 | 77 | 97 | 35 | 55 |
TS-STCHHHHHHHHHHHHHHH CS HLH 35 skKlsKaeiLekAveYIksLq 55 +K s ++ +e+Av+YIk+Lq Bostr.13671s0205.1.p 77 EGKRSSSDHVEEAVNYIKDLQ 97 6899****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.73E-4 | 60 | 101 | No hit | No description |
SuperFamily | SSF47459 | 1.19E-6 | 61 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 178 aa Download sequence Send to blast |
MDFLSSPLFI PDFVYEDELD FSSLLSPSTF QEPNPSIPIT HIEADGKQII CEITAEDDEP 60 KNKRVKRREI EKQRRQEGKR SSSDHVEEAV NYIKDLQKKI KEVSEKRDKI MRSVTHPSST 120 RECSRRSLVS SSSSLLSNCS CVGDTHIDVA VSDTILVFQV FFQVLSQAQC FMLLVTS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.13671s0205.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603792.1 | 1e-56 | PREDICTED: transcription factor bHLH55 | ||||
Swissprot | Q9LN95 | 3e-57 | BH055_ARATH; Transcription factor bHLH55 | ||||
TrEMBL | A0A178W3V0 | 8e-57 | A0A178W3V0_ARATH; Uncharacterized protein | ||||
STRING | Bostr.13671s0205.1.p | 1e-125 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6228 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G12540.1 | 8e-38 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.13671s0205.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|