PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G022700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 770aa    MW: 82473.6 Da    PI: 7.5547
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G022700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.39.5e-16461500241
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                         ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C Nk +
  Brast10G022700.1.p 461 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNKPS 500
                         689**********************************976 PP
2TCR50.63.9e-16546584139
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN 
  Brast10G022700.1.p 546 RHKRGCNCKKSSCLKKYCECFQGGVGCSISCRCESCKNA 584
                         589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.1E-15460501IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.994461586IPR005172CRC domain
PfamPF036388.2E-12463498IPR005172CRC domain
SMARTSM011141.2E-15546587IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.7E-12548584IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MDTPDRPRAA APAAAGFEDS PVFNFINNLS PIPPPKPQAS VHNVQLFKSS DLVPVSSIFA  60
SPHVNPAKES KLVIRDDPVQ LPQDSNSPNS VRTRLGTAIR LIKSKNIVSE NCSFTCHLSQ  120
APIDSSINTS VSISNLPQPI QFVGGSAECD QNQNAGGDKD LSTDQERTVE GVFFDDTGID  180
KMDSSQPGRI VHENQLCEQS KDGFVAYDED YLATEELNSD MLRLAPPFDA ETQLVNETLN  240
ADHAHSGTLL TDGSSGSYIN NAAHDPHLYW DGAVDGSAMD YTPQLLPGVC QNQLVSNDQL  300
CNALTEPSNH MPMDQSALSQ HMRGTRRRCL FNEKAGAVNK AAKKISDRHS ANTTTPRCKT  360
SSSDRNSKPM KTPPCALPGI GLHLNALATI PKDKIVPYAA QSSTIQASNF PSAVSSSPAT  420
SEPNTANEDS SQAIVVANAD ESGQGSPKKK RHKFDDGDGT SCKRCSCKKS KCLKLYCECF  480
HAGVFCSEPC SCQGCLNKPS NMETVLSTRE QIESRNPLAF APKVIRTSEP GQELGEHSNK  540
TPASARHKRG CNCKKSSCLK KYCECFQGGV GCSISCRCES CKNAFGRREG VVLLSIEQAK  600
RGSVENIACV KEETSENDNQ LVIYQAANPA SAENVLTTPS VEDIRPLSAL PPSSSKRPRS  660
STKLLGHSSR LCNSQAPLKS DILLSPFESY AEMVLGDGAS DVLKGGLSPQ TSVKVVSPNK  720
KRISPPRIGT GLSPICKSGR KLILKSIPSF PSLCGDVNKV DPKTSSPAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1446558314120Protein lin-54 homolog
5fd3_B3e-1446558314120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G022700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577764.10.0protein tesmin/TSO1-like CXC 2 isoform X1
RefseqXP_014758712.10.0protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLI1IGN80.0I1IGN8_BRADI; Uncharacterized protein
STRINGBRADI4G02390.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127462630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.19e-79TESMIN/TSO1-like CXC 2