PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G176900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 214aa    MW: 21847.1 Da    PI: 5.2598
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G176900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.36.1e-161462255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         y+G+r  ++ g+Wv+eIr+p+    + +r++lg+f t+e+Aa a++ a+++l+g
  Brast09G176900.1.p 14 FYRGIR--SRCGKWVSEIREPR----KaRRIWLGTFPTPEMAAVAYDVAARALRG 62
                        69***5..779*********94....36*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.38E-181470IPR016177DNA-binding domain
SMARTSM003801.5E-291476IPR001471AP2/ERF domain
PROSITE profilePS5103220.0471470IPR001471AP2/ERF domain
CDDcd000189.68E-271571No hitNo description
PfamPF008476.9E-81562IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-271571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSEHGGSSSG KHPFYRGIRS RCGKWVSEIR EPRKARRIWL GTFPTPEMAA VAYDVAARAL  60
RGPDAALNFP AIAASRPAPA STSADDIRAG AAAAAASLAG AGAGIAPPGG AAGSSVQQQQ  120
FGGSSGAAAA AAGSAGSAAY LLQEAAGIGA NNYNVNQQQQ YFLDEEALFE TPQFLRNMAA  180
GMMMSPPRLS PDSSDESPDP SEGGESLWSY RDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-13170172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G176900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580357.11e-101ethylene-responsive transcription factor ERF025
TrEMBLA0A0Q3GSY25e-94A0A0Q3GSY2_BRADI; Uncharacterized protein
STRINGBRADI5G18850.11e-100(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-21ERF family protein