PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G065900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 376aa    MW: 41455.9 Da    PI: 8.0184
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G065900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.18.4e-1486124341
                 TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                         +k+C Ckks+Clk+YC Cfa g +Cse+C C  C+Nk++
  Brast08G065900.1.p  86 CKHCACKKSRCLKLYCPCFAGGGYCSEKCGCLPCFNKSD 124
                         89**********************************986 PP
2TCR50.25.3e-16171207339
                 TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         ++gCnCkks+ClkkYC+C+++g+ Cs  C+CedCkN 
  Brast08G065900.1.p 171 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCEDCKNP 207
                         589*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.2E-1384125IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.32485209IPR005172CRC domain
PfamPF036388.8E-1087122IPR005172CRC domain
SMARTSM011143.3E-15169210IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.8E-11172206IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEATPISVKP PSPVPAPAQP PPLPPPPPPT LIEAVPLAVV EPLPSPSPPP AVAGGLEADP  60
SAANQLALAT TPKRQRAEEA ADGNGCKHCA CKKSRCLKLY CPCFAGGGYC SEKCGCLPCF  120
NKSDYAETVQ TTRKVLLSRQ KRMSLKINRR SEANAEAMED AHNSSSSTPP RRGCNCKKSS  180
CLKKYCDCYQ DGTGCSLFCR CEDCKNPFGK NEGIMTEETK RFIYTGADLD NSEDDHEFVV  240
ERSPHMQSPI SKESSFQHTP SRNKASSRDA HLFPQGLSQW QHRWQSSKRQ SIDRVIDDSG  300
ENKNLNHDWQ LAKHQEDSYS ISRCIQILNS MAELSQVEKS VAPDVFLQPG NREIFISLGI  360
DVRALWLRRK IQNLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-128920614120Protein lin-54 homolog
5fd3_B7e-128920614120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G065900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568148.10.0protein tesmin/TSO1-like CXC 3
TrEMBLI1HHT80.0I1HHT8_BRADI; Uncharacterized protein
STRINGBRADI2G20347.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.14e-45Tesmin/TSO1-like CXC domain-containing protein