PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G338600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Trihelix

Protein Properties

Length: 752aa MW: 79759.7 Da PI: 6.212

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G338600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.6	2.3e-30	552	637	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+kqev aLi++r+ +e+r+++ lk+plWeevs++m++ g+ rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+ Brast04G338600.1.p 552 RWPKQEVEALIRVRSGLERRFQEPGLKGPLWEEVSARMAAAGYgGRSAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELN 637 8****************************************99*********************98.99999*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.573	545	610	IPR017877	Myb-like domain
SMART	SM00717	2.2E-4	549	612	IPR001005	SANT/Myb domain
CDD	cd12203	7.76E-28	551	617	No hit	No description
Pfam	PF13837	1.5E-21	552	639	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence Send to blast
MQSGYGGVSE FQQFIMDGGF AMAAAPPPPP PVPPQQQQAA QELGAPFRYQ PLHHHAMHPQ 60 QHHHAPPQMP PHFFGGPTAA GGGGIPFTQQ LLHHQAGQHH HHHLQLFHEQ QQHHHHQQQQ 120 HQQQHHKPQP QPPPPARWAP HPHQHLGLDM EAAVPESSRA AAAPPSGMPP FLAAAMSFKL 180 AVDPSGSGAT GGTDDAMNDG GGGGSGMMLH GGGGAGGGED EAATESRLRR WTGEEEASIK 240 EPSWRPLDID FIHSTSSSSK GAAGKDKPPT PESPSPAANA AANYFKKGAC GDNDNVAAAA 300 AAAGGSSSYK LFSELEAIYK PGSGGAGQTT GSGSGLTGDD NAMADLPHAP PPMCPDGDDL 360 LPHAPPPANA SEDTSAGEET ETPAVLQPPP PPASMADARR KRKRRRTAQQ EQQQAASSFF 420 ERLVQRLMEH QESLHAQFLD AMERRERERA ARDEAWRRQE SESFARERAA RAHDRASAAA 480 REAAIVSYLE KLSGQPVVLP PAVSSPAPAA SEDVMIISQP PQHEASSAVG TELVPYDGGG 540 GVMRSSMASP SRWPKQEVEA LIRVRSGLER RFQEPGLKGP LWEEVSARMA AAGYGGRSAK 600 RCKEKWENIN KYFRKAKESG KKRPAHAKTC PYFDELNRLY SGRGDSSMDG AGKAASSELL 660 DAVVKCPATG TGPAAADQAP HYGPPPGFAD AGDGEDEGRR EMVMDDGANK YDGGEDEGMV 720 GRSSGGRAMA AGDQEEDEGE SHGGHDDEDH H*

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence Send to blast

MQSGYGGVSE FQQFIMDGGF AMAAAPPPPP PVPPQQQQAA QELGAPFRYQ PLHHHAMHPQ  60
QHHHAPPQMP PHFFGGPTAA GGGGIPFTQQ LLHHQAGQHH HHHLQLFHEQ QQHHHHQQQQ  120
HQQQHHKPQP QPPPPARWAP HPHQHLGLDM EAAVPESSRA AAAPPSGMPP FLAAAMSFKL  180
AVDPSGSGAT GGTDDAMNDG GGGGSGMMLH GGGGAGGGED EAATESRLRR WTGEEEASIK  240
EPSWRPLDID FIHSTSSSSK GAAGKDKPPT PESPSPAANA AANYFKKGAC GDNDNVAAAA  300
AAAGGSSSYK LFSELEAIYK PGSGGAGQTT GSGSGLTGDD NAMADLPHAP PPMCPDGDDL  360
LPHAPPPANA SEDTSAGEET ETPAVLQPPP PPASMADARR KRKRRRTAQQ EQQQAASSFF  420
ERLVQRLMEH QESLHAQFLD AMERRERERA ARDEAWRRQE SESFARERAA RAHDRASAAA  480
REAAIVSYLE KLSGQPVVLP PAVSSPAPAA SEDVMIISQP PQHEASSAVG TELVPYDGGG  540
GVMRSSMASP SRWPKQEVEA LIRVRSGLER RFQEPGLKGP LWEEVSARMA AAGYGGRSAK  600
RCKEKWENIN KYFRKAKESG KKRPAHAKTC PYFDELNRLY SGRGDSSMDG AGKAASSELL  660
DAVVKCPATG TGPAAADQAP HYGPPPGFAD AGDGEDEGRR EMVMDDGANK YDGGEDEGMV  720
GRSSGGRAMA AGDQEEDEGE SHGGHDDEDH H*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	398	403	RRKRKR
2	399	404	RKRKRR
3	399	405	RKRKRRR
4	400	405	KRKRRR
5	401	405	RKRRR
6	401	406	RKRRRT

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00651	PBM	Transfer from LOC_Os02g01380	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G338600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357866	1e-101	AK357866.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1063K18.
GenBank	AK369025	1e-101	AK369025.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083O21.
GenBank	AK374271	1e-101	AK374271.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3059B02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003570777.1	0.0	trihelix transcription factor GTL1
TrEMBL	I1HW35	0.0	I1HW35_BRADI; Uncharacterized protein
STRING	BRADI3G00697.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6399	35	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-37	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Brast04G338600.1.p