PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G224700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 488aa    MW: 53371 Da    PI: 8.2759
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G224700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.31.5e-1366105242
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                         ++k+CnCk+s+Clk+YCeCfaa++ C+  C+C++C N++e+
  Brast04G224700.1.p  66 KRKHCNCKNSRCLKLYCECFAARVSCDG-CNCSNCGNNSEN 105
                         789*************************.********9975 PP
2TCR50.73.6e-16150189140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         k++kgC+Ckks ClkkYCeCf+a+  Cs++C+C dCkN e
  Brast04G224700.1.p 150 KHNKGCHCKKSGCLKKYCECFQANILCSKNCRCMDCKNFE 189
                         589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.9E-1565105IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.02866190IPR005172CRC domain
PfamPF036382.7E-1068102IPR005172CRC domain
SMARTSM011147.1E-19150191IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-12153188IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MEQEKQQPPP PNHQPKPVIP AAAGGMKAPA VAPQQQKPAA PVPRPWPVAF TPTKPAAEVK  60
NVTPKKRKHC NCKNSRCLKL YCECFAARVS CDGCNCSNCG NNSENEKIRK GAIEATLLRN  120
PLAFQPKIEN GPSTVNVRKD NSGALPLRPK HNKGCHCKKS GCLKKYCECF QANILCSKNC  180
RCMDCKNFEG SEERRALVQG DNTSERNNIQ QAANTALNGA IGSSGYKCSP VRRKISQEDS  240
LSEMQFQQVN LSDVSQLTPS STGFGGDNGF YSQSNSSKMI YRSPLANTIH LSDVNDLVKH  300
VVIACRKAAE AFPTIDDNKG VEVETEKEFH ASYGLDNNKS KVQDSDEASP MDIHNKACTD  360
QHNVNPRPAS PGTQALMCDE QDTTFGNDIY RSSFAATSCD KNISEKNALQ ENLVLTGLRD  420
YLRVLITRGK INEAKSSSEA AMELDARRYH GATPVFHPVK AEENYISSNG PETLRNIGIP  480
VPNDEQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-26571991132Protein lin-54 homolog
5fd3_B5e-26571991132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G224700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571196.10.0protein tesmin/TSO1-like CXC 5
TrEMBLI1HZH60.0I1HZH6_BRADI; Uncharacterized protein
STRINGBRADI3G10190.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.14e-85Tesmin/TSO1-like CXC domain-containing protein