PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G105700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 284aa    MW: 29423.3 Da    PI: 4.4916
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G105700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.2e-1789137255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+G+r ++ +g+Wv+eIr+p+    + +r++lg++ tae+Aa+a++ a+++l+g
  Brast04G105700.1.p  89 FYRGIR-CR-NGKWVSEIREPR----KaRRIWLGTYPTAEMAAAAYDVAARALRG 137
                         79***9.66.7*********94....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.29789145IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1889145IPR016177DNA-binding domain
SMARTSM003804.4E-2789151IPR001471AP2/ERF domain
CDDcd000183.65E-1790145No hitNo description
PfamPF008472.1E-990137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-2790145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAESEQPSAA SSSSPAPPQL QHAADNPKTV DDRSSSDPGG NSAASSHSPA PQPQQPGSDD  60
TVGIITTAMG AAATSSGEPS PRSTGRHPFY RGIRCRNGKW VSEIREPRKA RRIWLGTYPT  120
AEMAAAAYDV AARALRGPDA VLNFPGATAT RPAPASASPE DIRAAAAAAA AALQPIDKPR  180
ARAPEDAAAA GLPAAEVDQA QRHHDDLTGS AAAGGDEPGP RQQEIGNEEE EFMDEEAIFE  240
MPQMLRNMAA GMMMSPPRLS PTASDEWPAD PSGAELCASI RED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-13871451272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G105700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0988961e-103FP098896.1 Phyllostachys edulis cDNA clone: bphylf043a21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236849.11e-109ethylene-responsive transcription factor ERF027
SwissprotQ9FJ905e-43ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLI1ICK61e-107I1ICK6_BRADI; Uncharacterized protein
STRINGBRADI3G51610.11e-108(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-23ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]