PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G213800.6.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 329aa    MW: 36513 Da    PI: 8.9288
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G213800.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.57.2e-15104142341
                 TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                         +k+C+Ck+skClk+YC+Cfa+g++C+++C+C++C+N+ +
  Brast03G213800.6.p 104 RKNCKCKNSKCLKLYCDCFASGRYCNDDCNCKNCCNNVS 142
                         799*********************************976 PP
2TCR51.12.7e-16189229141
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                         k++kgC+Ck+s+ClkkYCeCf++++ Cs++CkC+dCkN e+
  Brast03G213800.6.p 189 KHTKGCHCKRSECLKKYCECFQSNVLCSQNCKCTDCKNYES 229
                         589***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.0E-11102143IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.98103229IPR005172CRC domain
PfamPF036384.0E-10105140IPR005172CRC domain
SMARTSM011147.2E-18189230IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12192227IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAYRNHWEAS YAIPTPPPAK KLQVRRRSPV LLQDSPLPAA KLPLSGVQVQ RPLQQVSPVL  60
TQLLPNIEVP ILLPTHATSV GVMLNSRYPW SETSSESIYG TPRRKNCKCK NSKCLKLYCD  120
CFASGRYCND DCNCKNCCNN VSHETARQDA INAVMERNPV AFMPKIGNIP RHAPQNPEYK  180
AAEGPLVGKH TKGCHCKRSE CLKKYCECFQ SNVLCSQNCK CTDCKNYESS EDRKEIRRIT  240
LQHGVYVQHV QNLASKGMIG PSAVLPRAAE KFSGLSVASL GRDQPIHDND SSQVLSPLVT  300
YVPTEDTISP VKLGPHGVTY RFRCCGRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-2910424311132Protein lin-54 homolog
5fd3_B3e-2910424311132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G213800.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3721956e-60AK372195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235073.10.0protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_014755713.10.0protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_014755714.10.0protein tesmin/TSO1-like CXC 6 isoform X2
TrEMBLA0A2K2D1500.0A0A2K2D150_BRADI; Uncharacterized protein
TrEMBLI1I6L50.0I1I6L5_BRADI; Uncharacterized protein
STRINGBRADI3G34670.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-38Tesmin/TSO1-like CXC domain-containing protein