PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G213800.5.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 369aa    MW: 41184.3 Da    PI: 8.7025
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G213800.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.38.5e-15144182341
                 TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                         +k+C+Ck+skClk+YC+Cfa+g++C+++C+C++C+N+ +
  Brast03G213800.5.p 144 RKNCKCKNSKCLKLYCDCFASGRYCNDDCNCKNCCNNVS 182
                         799*********************************976 PP
2TCR50.93.1e-16229269141
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                         k++kgC+Ck+s+ClkkYCeCf++++ Cs++CkC+dCkN e+
  Brast03G213800.5.p 229 KHTKGCHCKRSECLKKYCECFQSNVLCSQNCKCTDCKNYES 269
                         589***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.0E-11142183IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.98143269IPR005172CRC domain
PfamPF036384.7E-10145180IPR005172CRC domain
SMARTSM011147.2E-18229270IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-12232267IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDKPPNVPRD SVQLDFASAF YAGKPEIAAT AAALSHALGP PRLPTHHQLM PLKVNVQSSL  60
PPWPPVLWPT AITGKHPMPS LLHLQLRSCR CVDVHLYCCK IHHCRLQNYH YQGCRCSAHC  120
NRMLNSRYPW SETSSESIYG TPRRKNCKCK NSKCLKLYCD CFASGRYCND DCNCKNCCNN  180
VSHETARQDA INAVMERNPV AFMPKIGNIP RHAPQNPEYK AAEGPLVGKH TKGCHCKRSE  240
CLKKYCECFQ SNVLCSQNCK CTDCKNYESS EDRKEIRRIT LQHGVYVQHV QNLASKGMIG  300
PSAVLPRAAE KFSGLSVASL GRDQPIHDND SSQVLSPLVT YVPTEDTISP VKLGPHGVTY  360
RFRCCGRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-2914427611130Protein lin-54 homolog
5fd3_B8e-2914427611130Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G213800.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3721957e-60AK372195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235073.10.0protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_014755713.10.0protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_014755714.10.0protein tesmin/TSO1-like CXC 6 isoform X2
TrEMBLA0A2K2D1330.0A0A2K2D133_BRADI; Uncharacterized protein
STRINGBRADI3G34670.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-36Tesmin/TSO1-like CXC domain-containing protein