PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009150852.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 871aa MW: 95947.5 Da PI: 4.89

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009150852.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.1	3.5e-28	598	648	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek i le+l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ XP_009150852.1 598 EKIIGLEVLQQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 648 7889*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	8.8E-4	190	284	IPR029016	GAF domain-like
PROSITE profile	PS51519	16.642	587	668	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-24	601	648	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.28E-23	763	858	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-23	771	854	No hit	No description
SMART	SM00666	6.8E-28	773	856	IPR000270	PB1 domain
PROSITE profile	PS51745	26.993	773	856	IPR000270	PB1 domain
CDD	cd06407	4.88E-42	774	855	No hit	No description
Pfam	PF00564	4.8E-16	774	855	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 871 aa Download sequence Send to blast
MEEDGGSDGG EGNGGFSPNS SFGAFPEMPM DLDLDELFFD GCWLETTDLK QSEETASASN 60 AVNDNTPFLY FSENSFQENV SNEETERTPN QEPLNQVASS SEQAEKFLLE EAEVARRWWI 120 APRGSEGPSS SVKERLLRAI SGLDEAVPDK DFLVQIWVPF QQEGKNFLTT LAQPHLFNQK 180 YSSLAKYRHV SETYNFPADE GSKDVGLPGR VFLQKLPEWT PDVRFFRSEE YPRIKEAQKC 240 DVRGSLAVPV FERGSGTCLG VVEIITTTQK MNYRPELENI CKALEAVDLR SSSNLKTPST 300 EFLQVYNDFY YAALPEISDF LASVCRSYDL PLALSWAPCD RQGKGGSRHS DENFSQCVST 360 IDSACFVLDD QSKCFLEACS EYHLLQGEGM VGKAFKETKL FFVPEVTIFS KTNYALAHHA 420 KVSGLHAALA VPLKGKSNGL VEFVLEFFFP KSCIDTEAKE KMLKSLSVTL QQDFRSSNLV 480 IDKDLELEVV LPDGEDMVLS ESPLNGAETE ESLREVHMQD SSQMIKANEK GKDKKDESKL 540 SSGMDNSQLD SVPNNVPSGA EPGGLRVDAG PSTEPASTGG GSMLGSRRPG DKRRSKNEKI 600 IGLEVLQQYF AGSLKDAAKS IGVCPTTLKR ICRHHGITRW PSRKIKKVGH SLKKLQVVMD 660 SVQGAQGSLP LDSFYSSFPA LSSPNMSSNG PSLKNKEQIQ HLAEDKPAPR SPSSSCSGSS 720 TNTANTLQVA EEADAVLKKA HSEAELHKTF KEPPLLENLA GSSSNKSLRA GGGIKVKATF 780 GEAIIRFTLP PSWGYRELEQ EIARRFSIDD VSWFDLKYLD DDKEWVLLKC EGDLEECIDI 840 HRSSQSQTIK ISLHDAFQVK LGGSFGSTGA S

Sequence ? help Back to Top

Protein Sequence Length: 871 aa Download sequence Send to blast

MEEDGGSDGG EGNGGFSPNS SFGAFPEMPM DLDLDELFFD GCWLETTDLK QSEETASASN  60
AVNDNTPFLY FSENSFQENV SNEETERTPN QEPLNQVASS SEQAEKFLLE EAEVARRWWI  120
APRGSEGPSS SVKERLLRAI SGLDEAVPDK DFLVQIWVPF QQEGKNFLTT LAQPHLFNQK  180
YSSLAKYRHV SETYNFPADE GSKDVGLPGR VFLQKLPEWT PDVRFFRSEE YPRIKEAQKC  240
DVRGSLAVPV FERGSGTCLG VVEIITTTQK MNYRPELENI CKALEAVDLR SSSNLKTPST  300
EFLQVYNDFY YAALPEISDF LASVCRSYDL PLALSWAPCD RQGKGGSRHS DENFSQCVST  360
IDSACFVLDD QSKCFLEACS EYHLLQGEGM VGKAFKETKL FFVPEVTIFS KTNYALAHHA  420
KVSGLHAALA VPLKGKSNGL VEFVLEFFFP KSCIDTEAKE KMLKSLSVTL QQDFRSSNLV  480
IDKDLELEVV LPDGEDMVLS ESPLNGAETE ESLREVHMQD SSQMIKANEK GKDKKDESKL  540
SSGMDNSQLD SVPNNVPSGA EPGGLRVDAG PSTEPASTGG GSMLGSRRPG DKRRSKNEKI  600
IGLEVLQQYF AGSLKDAAKS IGVCPTTLKR ICRHHGITRW PSRKIKKVGH SLKKLQVVMD  660
SVQGAQGSLP LDSFYSSFPA LSSPNMSSNG PSLKNKEQIQ HLAEDKPAPR SPSSSCSGSS  720
TNTANTLQVA EEADAVLKKA HSEAELHKTF KEPPLLENLA GSSSNKSLRA GGGIKVKATF  780
GEAIIRFTLP PSWGYRELEQ EIARRFSIDD VSWFDLKYLD DDKEWVLLKC EGDLEECIDI  840
HRSSQSQTIK ISLHDAFQVK LGGSFGSTGA S

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009150852.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009150852.1	0.0	PREDICTED: protein NLP1-like
Refseq	XP_009150853.1	0.0	PREDICTED: protein NLP1-like
Refseq	XP_009150854.1	0.0	PREDICTED: protein NLP1-like
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	M4CZL2	0.0	M4CZL2_BRARP; Uncharacterized protein
STRING	Bra009659.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631]