PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009149597.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 401aa MW: 46027.2 Da PI: 6.2351

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009149597.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.2	7.8e-27	89	183	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+++v++Li+a+++++++++ + +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d++ XP_009149597.1 89 KWTDKMVKLLITAVSYIGDDSSMDGgsrrkfaalQKKGKWKSVSKVMSERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDSI 183 7************8888887543345556677********************************************669999998888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.5E-24	87	210	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MDGNFPQGGV VRGGPSSFGG FDLQTSMNQH RHSLHEGLPF TMATAQTCDH HHNVPMTEQH 60 KGDSDDDEPS FNEEGGEKST KGSPWQRVKW TDKMVKLLIT AVSYIGDDSS MDGGSRRKFA 120 ALQKKGKWKS VSKVMSERGY HVSPQQCEDK FNDLNKRYKK LNDMLGRGTS CQVVENPALL 180 DSIGYLNDKE KDDVRKIMSS KHLFYEEMCS YHNGNRLHLP HDLALQRSLK LALRNRDDHE 240 SHHQVEDVED DDGEGEEHDE YDDFTHGGCR GVHLGGGGAL KKARQSHSHE DVDHPGQQVS 300 SLECNKLSLA QMPFPQGGEE SERSALMQKQ WIESRTLQLE EQKLQIQVEL LELEKQRFRW 360 ERFSKKRDQE LERMRMENER MKLENDRMGL ELKQRELGVE L

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MDGNFPQGGV VRGGPSSFGG FDLQTSMNQH RHSLHEGLPF TMATAQTCDH HHNVPMTEQH  60
KGDSDDDEPS FNEEGGEKST KGSPWQRVKW TDKMVKLLIT AVSYIGDDSS MDGGSRRKFA  120
ALQKKGKWKS VSKVMSERGY HVSPQQCEDK FNDLNKRYKK LNDMLGRGTS CQVVENPALL  180
DSIGYLNDKE KDDVRKIMSS KHLFYEEMCS YHNGNRLHLP HDLALQRSLK LALRNRDDHE  240
SHHQVEDVED DDGEGEEHDE YDDFTHGGCR GVHLGGGGAL KKARQSHSHE DVDHPGQQVS  300
SLECNKLSLA QMPFPQGGEE SERSALMQKQ WIESRTLQLE EQKLQIQVEL LELEKQRFRW  360
ERFSKKRDQE LERMRMENER MKLENDRMGL ELKQRELGVE L

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009149597.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY045850	1e-146	AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBank	AY091378	1e-146	AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBank	CP002684	1e-146	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F16F4	1e-146	AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009149597.1	0.0	PREDICTED: uncharacterized protein LOC103872912
TrEMBL	A0A397YZY6	0.0	A0A397YZY6_BRACM; Uncharacterized protein
TrEMBL	M4EAS2	0.0	M4EAS2_BRARP; Uncharacterized protein
STRING	Bra025881.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-141	sequence-specific DNA binding transcription factors