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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009147554.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
Trihelix |
| Protein Properties |
Length: 301aa MW: 33272.3 Da PI: 8.4521 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009147554.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 48.4 | 2.5e-15 | 73 | 155 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+++ +++Li+a ++ ++ ++g lk+++W ev++ + + ++ ++ +qCk++++ ++k+yk++k+ ++ s++++f++le
XP_009147554.1 73 CWSEEATKVLINAWGDRFSEPGKGTLKQQQWHEVAEIVnssGQCKYAKTDVQCKNRIDTVKKKYKQEKAKNGP------SKWAFFKKLE 155
7*************************************7666677899***********************97......58******98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MMEEEDETPS QQSPRDSLSP APILPTSNVT VASATKPPPS SSSQSPLALV VQTPSVNRNG 60
RIGGGGGGGR DDCWSEEATK VLINAWGDRF SEPGKGTLKQ QQWHEVAEIV NSSGQCKYAK 120
TDVQCKNRID TVKKKYKQEK AKNGPSKWAF FKKLESLIGG GGKAHVGGRS SGPMRWHFRK 180
RSASESESES EPERSAESLP PPQPLLPKRV KMGESGVGDV AKAILGFTEA YEKAETAKLK 240
LMMELEKERM KFAKEMELQR MQFLKTQMEI TRNNQEEERS KRDGDDDDDD RNVKNNGDVS 300
S
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Induced by seed imbibition with a peak after 1 hour and then steadily decreases to be barely detectable at day 3. {ECO:0000269|PubMed:19155348}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ973845 | 0.0 | DQ973845.1 Brassica napus clone PBCESTNA20 microsatellite sequence. |
