PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146877.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 544aa    MW: 59265.9 Da    PI: 7.0008
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146877.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.16.4e-20162248186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +L++a++++ ++l+rg+l++ +We+v++ +  r +++ +s +qCk+k++nl+kryk ++++++++  +s s++p+f+++e
  XP_009146877.1 162 EWSDAAITCLLDAYSDKFTQLNRGNLRGRDWEDVAATVseRCEKLIKSVEQCKNKIDNLKKRYKLERHRMSSG-GTSASHWPWFKKME 248
                     5*************************************77788999**************************9.666779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-21160250No hitNo description
Gene3DG3DSA:3.40.1160.105.0E-64295536IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536337.85E-52303536IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042543.35E-116305537No hitNo description
PfamPF006962.1E-21306516IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MASCDDDFSL LGGEDQSNPN QHHHHHHQVL HHAPYAPRRF APKLSNQIHA PHHHQSNGDE  60
DDEHHDVVAS SAFHGVNPFS TDENSNPYDN NNNNAAVEGG DEDLDANRSR IGGGARLEKR  120
QSQEELSDGG TTNGGDTTPY GSFKRPRTSS SSAGEYRKDR EEWSDAAITC LLDAYSDKFT  180
QLNRGNLRGR DWEDVAATVS ERCEKLIKSV EQCKNKIDNL KKRYKLERHR MSSGGTSASH  240
WPWFKKMEEI VGNSMTTKGA SDEDRSGSSL GNAAKPARRY PLVTYNPGVQ INNVKSKATS  300
NPRWRRVVLK ISGAALACTG PNNIDPKIVG LIAREVAMAC RLGVEVAIVV GSRNLFCGGT  360
WITATGLDRT TAYHISMMAS VMNSVLLQSS LEKMGVQARL QTGIAVQGVG EPYNRQRATR  420
HLDKGRVVIF GGIGATLGNP LLSSDAAAAL RAIDINAEAM VKGTNVEGVY DCHSQDSNAT  480
FEHITFHELA SRGLTTMDTM ALNFCEENSI PVVVFNFLEA GNITKALCGE QVGTLIDRTG  540
RGVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-552965361239Uridylate kinase
3ek5_B2e-552965361239Uridylate kinase
3ek5_C2e-552965361239Uridylate kinase
3ek5_D2e-552965361239Uridylate kinase
3ek5_E2e-552965361239Uridylate kinase
3ek5_F2e-552965361239Uridylate kinase
3ek6_A2e-552965361239Uridylate kinase
3ek6_B2e-552965361239Uridylate kinase
3ek6_C2e-552965361239Uridylate kinase
3ek6_D2e-552965361239Uridylate kinase
3ek6_E2e-552965361239Uridylate kinase
3ek6_F2e-552965361239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146877.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146877.10.0PREDICTED: uncharacterized protein LOC103870495
TrEMBLA0A397ZEP30.0A0A397ZEP3_BRACM; Uncharacterized protein
TrEMBLM4ELZ20.0M4ELZ2_BRARP; Uncharacterized protein
STRINGBra029812.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein