PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146876.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 419aa    MW: 47710 Da    PI: 6.914
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146876.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.33.6e-22110214186
        trihelix   1 rWtkqevlaLiearremeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sess 76 
                     +Wt+ +v++Li a+ +++++ + +                   +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+++++ +++t + ++
  XP_009146876.1 110 KWTDTMVRLLIMAVFYIGDEAGGALggdqtdakkkiitggmmlQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGRGTaCHVV 204
                     7**************8888887542334456677888899999**********************************************548889 PP

        trihelix  77 stcpyfdqle 86 
                     ++  +++ ++
  XP_009146876.1 205 ENQGLLEGMD 214
                     8888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.6E-20108240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MESNVMFTGF SPTMLSLETP QNPPNPVQFQ HPHPHPYTAA SDQQTHQQPM KPLYPYAAKA  60
KQLSPISVGG GGGGGEEDDR GSGSGSGCHP EDSAGTTDGK RKISPWHRMK WTDTMVRLLI  120
MAVFYIGDEA GGALGGDQTD AKKKIITGGM MLQKKGKWKS VSRAMVEKGF SVSPQQCEDK  180
FNDLNKRYKR VNDILGRGTA CHVVENQGLL EGMDHLTPKL REEVKKLLNS KHLFFKEMCA  240
YHNSCGHLDQ PGLMNLVPVQ SKPDFQMARI VEREEEEESD MAEDSETEIE DTDEEEEEET  300
SKKRRVSAAV KRMREETARV LDDPGKSAWE KKEWMRRKAL EIEERKVGYE WEAVEMEKQR  360
VKWVRYRSKK EREMEKAKLE NQRRSLETER MVLVLRRREI ELTELQLAGK RVDPSSATG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.284320.0root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146876.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146876.10.0PREDICTED: uncharacterized protein LOC103870494
TrEMBLM4ELZ30.0M4ELZ3_BRARP; Uncharacterized protein
STRINGBra029813.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.10.0sequence-specific DNA binding transcription factors