PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145223.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 413aa    MW: 45761.9 Da    PI: 8.0839
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145223.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.74.1e-2033122186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W ++e+ aL++a+++++ +lrrg+l++++W++v++++      +g  +s++qC++k+e+l+kry+ +k+++ +r  + ss++ +f  l+
  XP_009145223.1  33 CWNDEETAALVNAYKDKWFALRRGNLRAADWDDVAAAVsslhTLGGPAKSAIQCRHKIEKLRKRYRGEKQRSLNRPGKFSSSWDLFPILD 122
                     7*************************************888777889****************************9999*******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-2032124No hitNo description
SMARTSM005950.009741129IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MSTPDGSPVA MAVDPSTAVT VASTTTRRVP PPCWNDEETA ALVNAYKDKW FALRRGNLRA  60
ADWDDVAAAV SSLHTLGGPA KSAIQCRHKI EKLRKRYRGE KQRSLNRPGK FSSSWDLFPI  120
LDAMEFAPVT PTAVEPYDPD LDNDDESNGL DGFRVRSKRS GKFDSPRDGF GVRSRSKSQM  180
KMYGGFDSDH DSGGGFGLKR RYNGNPKVSG DFDADSDEEI VLVPKATRLK GSHGKPSSGE  240
FGGGFPLKSF GDRSFASHGF KAKNFSKPEA NFSPEMDYDD EFDEGFNPRI QHSRSSSRAN  300
GYGRKDGSYP RSNNTGVSNG YGSSSRFKHE QMNAADVESD PIDEVVSSVK MLTEMFVRVE  360
NSKMEMMREM EKTRMEMELK HCQMMLESQQ QIIGAFAEAL SEKKSTNARR PGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.66880.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145223.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325680.0AC232568.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH122A22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145223.10.0PREDICTED: uncharacterized protein LOC103868920
RefseqXP_013721585.20.0uncharacterized protein LOC106425450 isoform X1
RefseqXP_013733824.10.0uncharacterized protein LOC106437476
SwissprotO235501e-153FRIP2_ARATH; Protein FIP2
TrEMBLA0A3P5Z9K10.0A0A3P5Z9K1_BRACM; Uncharacterized protein
TrEMBLM4FG830.0M4FG83_BRARP; Uncharacterized protein
STRINGBra040110.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104831828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-21Trihelix family protein
Publications ? help Back to Top
  1. Sakai T, et al.
    The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots.
    Plant J., 2012. 70(2): p. 303-14
    [PMID:22122664]