PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009141327.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 320aa MW: 35109.3 Da PI: 5.6499

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009141327.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94	1.5e-29	48	141	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt+qe+l+Li+++r e+r+rrg+ +++p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ +++ XP_009141327.1 48 RWTRQEILVLIQGKRVAENRVRRGRaagmalgsgQMEPKWASVSSYCRRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQVKEETESYWVMRNDV 141 8********************97778888888****************************************************999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.6E-5	48	113	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.4	48	114	IPR017877	Myb-like domain
Pfam	PF13837	4.2E-13	48	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MALEQQLGLA VTAVDGDGNG NGNGGGGENS APSNEGGDDS VKTARLPRWT RQEILVLIQG 60 KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCRRHGVN RGPVQCRKRW SNLAGDYKKI 120 KEWESQVKEE TESYWVMRND VRRERKLPGF FDKEVYDVVD GGVVPPALAL GLAPAATSTS 180 VEPEGVLSEL ERREPAPNKL LQDVIDKEKQ AACGVDDQGR VKEKDAEAAN PEAGSTSQEA 240 RKRKRTSVSE DEEKEEEATK SMDNQLIQIL ERNGQLLAAQ LEVQNTNLKL DREQRKDHGD 300 NLVAVLSKLA DAVAKIADKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009141327.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189292	0.0	AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141327.1	0.0	PREDICTED: trihelix transcription factor ASR3
Swissprot	Q8VZ20	1e-168	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	M4DZB3	0.0	M4DZB3_BRARP; Uncharacterized protein
STRING	Bra021860.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6557	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-146	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]