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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009138417.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
SRS |
| Protein Properties |
Length: 313aa MW: 33917.1 Da PI: 7.8119 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009138417.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 224.1 | 2.7e-69 | 91 | 242 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssae 95
rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s + ++ +kr+r++ + +ss++l+s +
XP_009138417.1 91 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSgGSSIPKRHRDT---TLPETSSSRLPSDS 182
67899****************************************************999887766578888898886...667778889999** PP
DUF702 96 skkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
+ e+ ++s+P+evss+a+frcv++s+vdd g+ ++aYqt+v+igGh+fkGiLydqG+e+
XP_009138417.1 183 AGLEMGKASFPPEVSSDALFRCVKMSGVDDgGDGQYAYQTTVNIGGHLFKGILYDQGPES 242
******************************8899************************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MAGMFSLGGN NNNNNNNGYQ EEGNQQQQKT NWVWYRSNTN TNNINPSSSV WQIPPEQQIL 60
MHHHQPHPQQ QSIDLYPGHQ IEVSDIATSS RSITISCRDC GNQAKKDCTH MRCRTCCKSR 120
GFDCSTHVRS TWIPVARRRE RQQQLHMSTS GGGGGSGGSS IPKRHRDTTL PETSSSRLPS 180
DSAGLEMGKA SFPPEVSSDA LFRCVKMSGV DDGGDGQYAY QTTVNIGGHL FKGILYDQGP 240
ESSYMSGGSG GSDHHSSSAG GGNTFNTPAI ADGGRGGSSA MFVDPNSSSY YSSNMMTMFV 300
PPGTQFYQNP PRS
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the apical parts of the developing gynoecium. In carpels, first observed at late development stage in the most apical parts of the open-ended gynoecium. Accumulates in differentiating style and stigmatic tissues. Not expressed in the stigma after fertilization but remains in the style until full silique maturation. Also detected in anthers. In seedlings, present in the shoot apex and in cotyledons, leaf primordia, stipules, hydathodes and in primordia of lateral roots. Detected in developing trichomes and in leaf and pedicel attachment sites. {ECO:0000269|PubMed:12361963}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, cauline leaves, flowers and siliques. {ECO:0000269|PubMed:12361963}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GU205265 | 0.0 | GU205265.1 Brassica rapa subsp. pekinensis stylish 2b (STY2b) mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT4G36260.1 | 1e-119 | Lateral root primordium (LRP) protein-related |
