PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009137614.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 957aa MW: 105460 Da PI: 5.5227

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009137614.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.9e-29	586	636	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ XP_009137614.1 586 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 636 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	3.04E-5	209	280	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.393	575	656	IPR003035	RWP-RK domain
Pfam	PF02042	7.3E-26	588	636	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.27E-23	857	945	No hit	No description
Pfam	PF00564	6.5E-20	861	942	IPR000270	PB1 domain
PROSITE profile	PS51745	27.384	861	943	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.2E-27	861	943	No hit	No description
SMART	SM00666	2.8E-28	861	943	IPR000270	PB1 domain
CDD	cd06407	5.41E-34	862	942	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 957 aa Download sequence Send to blast
MCEPDDNTAR NGATPPPSRS REVLMDVDDL DLDGSWPLDQ IPYLSSSNRM ISPLFVSSSS 60 EQPCSPLWAF SDVGGAVNHG GDDEKISSAS GVPSFRLADY PLFLPYSSSP SVAENTLEKH 120 NGFQFPSPLM SLVPPENTDN YCVIKERMTQ ALRYFKESTE QHVLAQVWAP VRKNGRDLLT 180 TLGQPFVLNP NGNGLNQYRM ISLTYMFSVD SESDIELGLP GRVFRQKLPE WTPNVQYYSS 240 KEFSRLDHAL HYNVRGTLAL PVFNPSGESC IGVVELIMTS EKIHYAPEVD RVCKALEAVN 300 LKSSEILDHQ TTQICNESRQ NALAEILEVL TVVCETHNLP LAQTWVPCQH GSVLANGGGL 360 KKNCTSFDGS CMGQVCMSTT DMACYVVDAH VWGFRDACLE HHLQKGQGVA GRAFLNGGSC 420 FCRDITKFCK TQYPLVHYAL MFKLTTCFAI SLQSSYTGDD SYILEFFLPS SMTDNQEQDS 480 LLGSLLVTMK EHFQSLRVAS GVDFGEDDDK LSFEIIQALP DEKIHSEIES IRVPFSGFKS 540 NATETLLIPQ PAVQSSAPVN GKTNVATVNG VVKEKKKTEK KRGKTEKTIS LDVLQQYFTG 600 SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKIKKVNRSI TKLKRVIESV QCTDGGLDLT 660 SMAVSSIPWT HGQTAAHPLN SPNGSKPPEL PTTNNSPNHW SSDHHSPPEP NGSPELPSNG 720 HKRSRTGDES AGTPTSHGSC DGNQLDETKV PNQDPLFTVG GPPGLFFPPY SRDHDVSAAS 780 FAMPNRLLGT IDHFRGMPIE DAGSSKDLRN LCSTAAFDDK FPDSNWMNND NNSNNNMYAP 840 PKEEEVANIT REPPSGSEMR TVTIKASYKE DIIRFRISSG SGIMELKDEV AKRLRLDAGT 900 FDIKYLDDDN EWVLIACDAD LQECLEIPRS SRTNVVRLLV HDVTANLGSS CESTGEL

Sequence ? help Back to Top

Protein Sequence Length: 957 aa Download sequence Send to blast

MCEPDDNTAR NGATPPPSRS REVLMDVDDL DLDGSWPLDQ IPYLSSSNRM ISPLFVSSSS  60
EQPCSPLWAF SDVGGAVNHG GDDEKISSAS GVPSFRLADY PLFLPYSSSP SVAENTLEKH  120
NGFQFPSPLM SLVPPENTDN YCVIKERMTQ ALRYFKESTE QHVLAQVWAP VRKNGRDLLT  180
TLGQPFVLNP NGNGLNQYRM ISLTYMFSVD SESDIELGLP GRVFRQKLPE WTPNVQYYSS  240
KEFSRLDHAL HYNVRGTLAL PVFNPSGESC IGVVELIMTS EKIHYAPEVD RVCKALEAVN  300
LKSSEILDHQ TTQICNESRQ NALAEILEVL TVVCETHNLP LAQTWVPCQH GSVLANGGGL  360
KKNCTSFDGS CMGQVCMSTT DMACYVVDAH VWGFRDACLE HHLQKGQGVA GRAFLNGGSC  420
FCRDITKFCK TQYPLVHYAL MFKLTTCFAI SLQSSYTGDD SYILEFFLPS SMTDNQEQDS  480
LLGSLLVTMK EHFQSLRVAS GVDFGEDDDK LSFEIIQALP DEKIHSEIES IRVPFSGFKS  540
NATETLLIPQ PAVQSSAPVN GKTNVATVNG VVKEKKKTEK KRGKTEKTIS LDVLQQYFTG  600
SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKIKKVNRSI TKLKRVIESV QCTDGGLDLT  660
SMAVSSIPWT HGQTAAHPLN SPNGSKPPEL PTTNNSPNHW SSDHHSPPEP NGSPELPSNG  720
HKRSRTGDES AGTPTSHGSC DGNQLDETKV PNQDPLFTVG GPPGLFFPPY SRDHDVSAAS  780
FAMPNRLLGT IDHFRGMPIE DAGSSKDLRN LCSTAAFDDK FPDSNWMNND NNSNNNMYAP  840
PKEEEVANIT REPPSGSEMR TVTIKASYKE DIIRFRISSG SGIMELKDEV AKRLRLDAGT  900
FDIKYLDDDN EWVLIACDAD LQECLEIPRS SRTNVVRLLV HDVTANLGSS CESTGEL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009137614.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228452	0.0	AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13.
GenBank	BT005776	0.0	BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009137614.1	0.0	PREDICTED: protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	M4DB94	0.0	M4DB94_BRARP; Uncharacterized protein
STRING	Bra013754.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]