PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135031.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 416aa    MW: 46885.8 Da    PI: 8.3665
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135031.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.19.9e-23101215186
        trihelix   1 rWtkqevlaLiearremeerlr...rgk..........................lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                     +Wt+ +v++Li a+ +++++ +   + +                          +kk++W++vs++m e+gf++sp+qC++k+++lnkryk++++
  XP_009135031.1 101 KWTDTMVRLLIMAVYYIGDEGGlvgD-QteakkkisgggggggggggggggavlQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVND 194
                     7**************88888884331.144567888999999999************************************************** PP

        trihelix  67 gekkr.tsessstcpyfdqle 86 
                     + +k+ +++++++ ++++ ++
  XP_009135031.1 195 ILGKGtACRVVENQALLETMD 215
                     *****559********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-1999241No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MEPNGFSAFD PRMLTLETPQ NPPNPVQFQH PHPYSTAGDQ HPHHQQPLKS LYPRSSKAMQ  60
LSPLSGGDDE DRGSGSGSGC HPEDSVGTDG KRRASPWHRM KWTDTMVRLL IMAVYYIGDE  120
GGLVGDQTEA KKKISGGGGG GGGGGGGGGG AVLQKKGKWK SVSRAMVEKG FSVSPQQCED  180
KFNDLNKRYK RVNDILGKGT ACRVVENQAL LETMDHLTPK LKDEVKKLLN SKHLFFKEMC  240
AYHNSCGHLD QPQASQAPSH HRPEQQSCFH AAEVAEESET AEDSESEMEE EETSKKRRRG  300
EGVSGAVKRM REETARALDE PGKSAWEKRE WMRRKALELE ERKVGYEWEA VEMEKERVKW  360
MRYRSKKERE MEKAKLENQR RMLETERMVL ILRRREIELV ELQSLGKRVD PSSATG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.284321e-109root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135031.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135031.10.0PREDICTED: trihelix transcription factor GT-3a-like
TrEMBLA0A398A0E50.0A0A398A0E5_BRACM; Uncharacterized protein
TrEMBLM4CAR10.0M4CAR1_BRARP; Uncharacterized protein
STRINGBra001290.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-176sequence-specific DNA binding transcription factors