PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009133683.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 356aa MW: 39300.6 Da PI: 9.661

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009133683.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.6	1.2e-21	52	143	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+ +e+ aLi+++r+++++l+rg+lk+++Weev++++ +++++qC++k+e+l+kry+ + +++++ ++ +s++++++++ea XP_009133683.1 52 CWSLEETIALIDGYRDKWHALNRGNLKANHWEEVAEAVagncPGVTPKKTAVQCRHKMEKLRKRYRTEIQRARSVpVARFVSSWVHYKRMEA 143 7***********************************88544444599*********************977999********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0031	49	115	IPR001005	SANT/Myb domain
Pfam	PF13837	1.1E-19	51	144	No hit	No description
PROSITE profile	PS50090	6.214	53	113	IPR017877	Myb-like domain
SMART	SM00595	7.3E-14	60	149	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MSDPDSPLEQ VPLPVRNKSP PPQPDDSVTD LTIASTPAAV ATKNSRRLPP PCWSLEETIA 60 LIDGYRDKWH ALNRGNLKAN HWEEVAEAVA GNCPGVTPKK TAVQCRHKME KLRKRYRTEI 120 QRARSVPVAR FVSSWVHYKR MEAMEDRPES KPGGGDEERD ELYGGGGSVG RSTPRFFNRN 180 GTAGGSSSSG GIRIRIPTGV SIAQPGPRFP GKIDPKYTAS ASSRLGRGVG GGTSYGARGV 240 RIQEGGGGGE ERAGKRGREM MMMMTTEEGE EEEESDDPMV EIASAIKLLG DTLLRTEEKK 300 MEMTREIEAM RMEMEMKRTK MILESQQRIV EAFAKSMSEN LEEKKKKARR VSSLPP

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MSDPDSPLEQ VPLPVRNKSP PPQPDDSVTD LTIASTPAAV ATKNSRRLPP PCWSLEETIA  60
LIDGYRDKWH ALNRGNLKAN HWEEVAEAVA GNCPGVTPKK TAVQCRHKME KLRKRYRTEI  120
QRARSVPVAR FVSSWVHYKR MEAMEDRPES KPGGGDEERD ELYGGGGSVG RSTPRFFNRN  180
GTAGGSSSSG GIRIRIPTGV SIAQPGPRFP GKIDPKYTAS ASSRLGRGVG GGTSYGARGV  240
RIQEGGGGGE ERAGKRGREM MMMMTTEEGE EEEESDDPMV EIASAIKLLG DTLLRTEEKK  300
MEMTREIEAM RMEMEMKRTK MILESQQRIV EAFAKSMSEN LEEKKKKARR VSSLPP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009133683.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189399	0.0	AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009133683.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	M4C832	0.0	M4C832_BRARP; Uncharacterized protein
STRING	Bra000360.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8963	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-122	Trihelix family protein