PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129840.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 608aa    MW: 69354.2 Da    PI: 7.3875
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129840.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.52.3e-1596177285
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt...sessstcpyfdql 85 
                     W+ +evlaL+++r+ +e+++ +       We  s+k++e gf+rsp++Ckek+e+ ++ry + +++ ++++    +++ ++++f+++
  XP_009129840.1  96 WCSDEVLALLRFRSTVENWFPEF-----TWELTSRKLAEVGFKRSPQECKEKFEEEERRYFNSNNNTNDHHisnYNNKGNYRMFSEV 177
                     ********************998.....9*******************************999888887732223344466666665 PP
2trihelix97.41.2e-30451547186
        trihelix   1 rWtkqevlaLiearr.......emeerlr.....rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                     rW+++evlaLi++rr       +++++ +     +++++ plWe++skkm e g++r +k+Ckekwen+nk++kk+k+ +kkr + +s+tcpyf+
  XP_009129840.1 451 RWPRDEVLALINIRRsissindDDHHKGGislssSSSRAVPLWERISKKMVESGYKRRAKRCKEKWENINKYFKKTKDVNKKR-PLDSRTCPYFH 544
                     8**************777766533333332222224699*******************************************8.9********** PP

        trihelix  84 qle 86 
                     ql+
  XP_009129840.1 545 QLT 547
                     *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-1094160No hitNo description
PROSITE profilePS500905.48295147IPR017877Myb-like domain
PfamPF138376.1E-19450548No hitNo description
CDDcd122032.53E-23450527No hitNo description
PROSITE profilePS500906.528451520IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MFDGGVPEQI DQFIASPQPP PLLPPHQPAT ERSLPFPVSF ASFNSNHQAQ HMLSLDSGKI  60
IHHQHHHGIK DGGVSSEWIG HTDHDGHNHR HFHHPWCSDE VLALLRFRST VENWFPEFTW  120
ELTSRKLAEV GFKRSPQECK EKFEEEERRY FNSNNNTNDH HISNYNNKGN YRMFSEVEEF  180
YHHGHNDDQH VSSEVGDNQN KRNNSLEGKE NVEEMGHNLL EEGKIDHQGQ SQVEESSMGN  240
KINPVDNVRN EDGAKSSSSS SLMMIMRDKK KRKRKKKKER FGVLKGFCEG LVRNMIVQQE  300
EMHRKLLEDM VKKEEEKMAR EEAWKTQEME RLNKEVEIRA NEQAMASDRN TSIIKFICKF  360
TGHDNHDDGN GTVQSPSPSQ DSSSLVLPKT QGRRKCQTSS SLLPQALTPH NPISLQTNDI  420
PLEPISTETL KTKTQNRKPP LSDEKSDTGK RWPRDEVLAL INIRRSISSI NDDDHHKGGI  480
SLSSSSSRAV PLWERISKKM VESGYKRRAK RCKEKWENIN KYFKKTKDVN KKRPLDSRTC  540
PYFHQLTALY SQPSTGTTTT ATDTSTGELE TRVGSGDPDD IPAVMHVDAN GAGEKSNVQF  600
SGFDLALP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269274KKRKRK
2269276KKRKRKKK
3269277KKRKRKKKK
4270278KRKRKKKKE
5271275RKRKK
6271277RKRKKKK
7271278RKRKKKKE
8273278RKKKKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129840.10.0PREDICTED: trihelix transcription factor GTL2-like
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLM4DVR30.0M4DVR3_BRARP; Uncharacterized protein
STRINGBra020607.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]