PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009128110.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SRS

Protein Properties

Length: 342aa MW: 38184.8 Da PI: 7.2889

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009128110.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	220.8	2.8e-68	113	278	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel.........kskkqsal 86 g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrer +q+a++++++a+s+ ++a++kr re +s + ++ XP_009128110.1 113 LGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQHASLQHHSATSRetQNAKAKRLREAnggdnddkdRSGGSGSA 207 6899***************************************************99999988443334444444477777776666777888 PP DUF702 87 sstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154 +t+l++a+s++ + s+ lP+evss+a+frcvrvss+++ +e+e+aYqtav+igGhvfkGiLydqGl++ XP_009128110.1 208 LATRLVNANSNSGFGESQnLPPEVSSPAIFRCVRVSSMENdeDEQEYAYQTAVNIGGHVFKGILYDQGLDQ 278 8999999999999876655***************98434556********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.0E-63	115	277	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.6E-27	117	159	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.8E-26	227	276	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MAGFFYLGGR DNINNKQDHH HVDKDHHQQD KSNYLYLYKD EIYNTNKGFE IWPPQYFQQQ 60 QEQQQHHVTA STNLYSFGMV PSSSNNNNNN RSRSLYFNVV SDHEPGGFSV TRLGGMNCQD 120 CGNQAKKDCP HLRCRTCCKS RGFHCQTHVK STWVPAAKRR ERLAQHASLQ HHSATSRETQ 180 NAKAKRLREA NGGDNDDKDR SGGSGSALAT RLVNANSNSG FGESQNLPPE VSSPAIFRCV 240 RVSSMENDED EQEYAYQTAV NIGGHVFKGI LYDQGLDQDH HHQLDLLAST ATTTNAEEIA 300 AKTAVTVAAN TNNGLMIDPS SLYPYQLNSF IAGTPFFTPP RS

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MAGFFYLGGR DNINNKQDHH HVDKDHHQQD KSNYLYLYKD EIYNTNKGFE IWPPQYFQQQ  60
QEQQQHHVTA STNLYSFGMV PSSSNNNNNN RSRSLYFNVV SDHEPGGFSV TRLGGMNCQD  120
CGNQAKKDCP HLRCRTCCKS RGFHCQTHVK STWVPAAKRR ERLAQHASLQ HHSATSRETQ  180
NAKAKRLREA NGGDNDDKDR SGGSGSALAT RLVNANSNSG FGESQNLPPE VSSPAIFRCV  240
RVSSMENDED EQEYAYQTAV NIGGHVFKGI LYDQGLDQDH HHQLDLLAST ATTTNAEEIA  300
AKTAVTVAAN TNNGLMIDPS SLYPYQLNSF IAGTPFFTPP RS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009128110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU205267	0.0	GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009128110.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9LQZ5	0.0	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	M4CVF6	0.0	M4CVF6_BRARP; Uncharacterized protein
STRING	Bra008203.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-152	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]