PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127942.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 443aa    MW: 50010.1 Da    PI: 6.7337
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127942.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.81.7e-15250309155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ ++++gr++A+++d  ++  g  +r ++++lg ++ +e+Aa+a++ a+ k++g
  XP_009127942.1 250 SQYRGVTKHRWTGRYEAHLWDnSCKkEGqsRRgRQVYLGGYDDEEKAARAYDLAAMKYWG 309
                     78*******************988886677557*************************98 PP
2AP247.25.6e-15352403155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_009127942.1 352 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 403
                     57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.41E-21250319No hitNo description
PfamPF008472.9E-11250309IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-17250319IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.4E-16251318IPR001471AP2/ERF domain
SMARTSM003803.1E-29251323IPR001471AP2/ERF domain
PROSITE profilePS5103219.006251317IPR001471AP2/ERF domain
PRINTSPR003677.1E-6252263IPR001471AP2/ERF domain
CDDcd000187.03E-26352412No hitNo description
PfamPF008478.4E-10352403IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-17352411IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-18353411IPR001471AP2/ERF domain
SMARTSM003802.1E-33353417IPR001471AP2/ERF domain
PROSITE profilePS5103219.019353411IPR001471AP2/ERF domain
PRINTSPR003677.1E-6393413IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MNKWLGFSLT PHLRISDRVQ EEDEENYVVT NQQKALMPLN SDGSPFFTDP LTHHPHPVWQ  60
YDINLNHDDH HHHDEEVPKL EDFFSNSHQT ECPPISGNNQ TNVNCTTMLN RLSPPGYLLY  120
EQAVSTPQYS NLDTNLSHDY GGSVSVFKSW LGQGTPTFPV SNTYVSGEGS TSNTSNFSHE  180
ETNYNTSGST LLLTMSHGAA SDLINELNVS VPVEEPVKVD EKRKSLVGKS QAKEPVETRK  240
SVDSLGQRTS QYRGVTKHRW TGRYEAHLWD NSCKKEGQSR RGRQVYLGGY DDEEKAARAY  300
DLAAMKYWGP TTHLNFPLSN YEKEMEELNN MTRQEFVAML RRNSSGFSRG ASIYRGVTRH  360
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGVNAVTNF DICRYDVKRI  420
CSNSTIINSD QAKRSPSNSA SGQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127942.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127942.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE10.0AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A078IIR90.0A0A078IIR9_BRANA; BnaA02g16050D protein
STRINGBra008040.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.10.0AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]