PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009127273.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 959aa MW: 106967 Da PI: 6.8119

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009127273.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.2	9.9e-09	147	229	2	72
trihelix 2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 W+ +e l+L +a r ++ r+g+ ++ + +ev++++ ++g++r +k kw+n+ ++++k++e+ek+ XP_009127273.1 147 WKPNEMLCLARAWRVQYQNQRTGSgsgsgsgegrgkTRAEKDREVAEYLNRKGVNRDSKVAGTKWDNMLGEFRKVNEWEKGAD 229 77777888877777555555544333444444444499999**************************************9863 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.2E-7	145	230	No hit	No description
CDD	cd00180	1.53E-9	807	948	No hit	No description
SuperFamily	SSF56112	4.01E-13	807	947	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	6.8E-5	809	911	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 959 aa Download sequence Send to blast
MGETTKGDAT KPSPNQISPP KDSSLDHQTP NPSVLHHLHQ SFLSSPIFIP TVSSPGAPVI 60 PKRPRFSSSG GLSPPQWRAL PSPSTVPTAS TISSLPFPST AVIAASSTET AGSSPLVQEA 120 TNTEKQQPET ESFQHKFRKG KYVSPVWKPN EMLCLARAWR VQYQNQRTGS GSGSGSGEGR 180 GKTRAEKDRE VAEYLNRKGV NRDSKVAGTK WDNMLGEFRK VNEWEKGADR ERFGKSYFRL 240 SPYERKQHQL PASFDEEVYN ELALFIGPRV RAPTISRSVS GGATADVTLT PPSAETLPPP 300 LHPPVMTSRD DDINNNPITS IGRGKRLALS IVGDDHPQYP YSSNIARGSG LFSNRSLYYN 360 PSCERIPSSS SSSSSLKDLR RVGKIRLTWE ESVNLWAEEG EVDYGRIRVC GSSFLNADEL 420 TYLDDSMVAS TMESFEDGPL KGFSLDKFIS GQHLKVFGRQ KSTSSSAPPL SVNMAFDRAQ 480 LPLSEHIHKS ISTLEFQDPS EHCLSKLRVP AGNLPSITEL ARYLQEPPPE DLRFPLRLDV 540 YNDLPLGKEL FFFTSSTELL DCRAITYDIL GPIMSPLNKG FVIFSKDSLI PLWDDCVNRM 600 VSKFCEMVVL RKPDSSSCVE NVQDQWPNVM GFVKGFGLWR GEEVDKVREG APDPSSLLVE 660 KILWSYNDLP YILGYYAIGL TVTFCSLSRS SYDRVTCTDL YSFDVSSPSD RIKALVPCYR 720 LASLLPLLAD QCTAGRLCYN DFERIIHGDF LTEMTPHTVT KYYSSKTKWN VAKGIYDFLD 780 QRVPHAEYLD KASEKDLSLS FKPRGIRVKP LNVDQLIESL MCVTRALVAL HDISFMHRNM 840 GWENVMKSET TSTSNAEWFV CGFEEAAESP QLNPHRPAAQ EEEEERGRHA PEMERGLHAV 900 KVDVWGVGYM IKTCGVSNVP KMLRELQGKC LEPNQENRPT AADCFHHLLQ VQPAVPSSY

Sequence ? help Back to Top

Protein Sequence Length: 959 aa Download sequence Send to blast

MGETTKGDAT KPSPNQISPP KDSSLDHQTP NPSVLHHLHQ SFLSSPIFIP TVSSPGAPVI  60
PKRPRFSSSG GLSPPQWRAL PSPSTVPTAS TISSLPFPST AVIAASSTET AGSSPLVQEA  120
TNTEKQQPET ESFQHKFRKG KYVSPVWKPN EMLCLARAWR VQYQNQRTGS GSGSGSGEGR  180
GKTRAEKDRE VAEYLNRKGV NRDSKVAGTK WDNMLGEFRK VNEWEKGADR ERFGKSYFRL  240
SPYERKQHQL PASFDEEVYN ELALFIGPRV RAPTISRSVS GGATADVTLT PPSAETLPPP  300
LHPPVMTSRD DDINNNPITS IGRGKRLALS IVGDDHPQYP YSSNIARGSG LFSNRSLYYN  360
PSCERIPSSS SSSSSLKDLR RVGKIRLTWE ESVNLWAEEG EVDYGRIRVC GSSFLNADEL  420
TYLDDSMVAS TMESFEDGPL KGFSLDKFIS GQHLKVFGRQ KSTSSSAPPL SVNMAFDRAQ  480
LPLSEHIHKS ISTLEFQDPS EHCLSKLRVP AGNLPSITEL ARYLQEPPPE DLRFPLRLDV  540
YNDLPLGKEL FFFTSSTELL DCRAITYDIL GPIMSPLNKG FVIFSKDSLI PLWDDCVNRM  600
VSKFCEMVVL RKPDSSSCVE NVQDQWPNVM GFVKGFGLWR GEEVDKVREG APDPSSLLVE  660
KILWSYNDLP YILGYYAIGL TVTFCSLSRS SYDRVTCTDL YSFDVSSPSD RIKALVPCYR  720
LASLLPLLAD QCTAGRLCYN DFERIIHGDF LTEMTPHTVT KYYSSKTKWN VAKGIYDFLD  780
QRVPHAEYLD KASEKDLSLS FKPRGIRVKP LNVDQLIESL MCVTRALVAL HDISFMHRNM  840
GWENVMKSET TSTSNAEWFV CGFEEAAESP QLNPHRPAAQ EEEEERGRHA PEMERGLHAV  900
KVDVWGVGYM IKTCGVSNVP KMLRELQGKC LEPNQENRPT AADCFHHLLQ VQPAVPSSY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009127273.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009127273.1	0.0	PREDICTED: uncharacterized protein LOC103852127
TrEMBL	M4E1B5	0.0	M4E1B5_BRARP; Uncharacterized protein
STRING	Bra022563.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8356	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	4e-09	Trihelix family protein