PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125422.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 310aa    MW: 36976.6 Da    PI: 6.8143
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125422.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.73.1e-2345127186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ +e+++L+ +r+e+++++ ++k++k lWe v +km+++gf rs++qCk+kw+nl  ryk ++++e +   + ++++p++++++
  XP_009125422.1  45 QWSIDETKELLGIREELDQTFMETKRNKLLWEVVVAKMADKGFARSAEQCKSKWKNLVSRYKVCETTEPE---PIRQQFPFYNEIQ 127
                     7********************************************************************8...566789***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122033.71E-2044106No hitNo description
PfamPF138378.5E-2045129No hitNo description
PROSITE profilePS500907.44546102IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDRRNPFHHH DHQLYQLIQQ QQLPPPPQST TVAMDLGGGG ERIPQWSIDE TKELLGIREE  60
LDQTFMETKR NKLLWEVVVA KMADKGFARS AEQCKSKWKN LVSRYKVCET TEPEPIRQQF  120
PFYNEIQSIF TARMQRMLWS EPRTSSKRKH NQFSSDEEVE EVAELNQDIN KELLSFVETQ  180
KKDTEVITTS TFTNPKKRAK KGKGTSKAET AGSTLKEMLE DFMRQTVKME KEWRDAWEMK  240
AREKEKREKE WQRRMAELEE ERAAAERRWM EREDERRLRE EARAQKRDTL IDVLLNQLNR  300
DQDDDQHQGF
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269|PubMed:15044016}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125422.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2409350.0AC240935.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrF042C17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125422.10.0PREDICTED: trihelix transcription factor GT-3a-like
RefseqXP_013731790.20.0trihelix transcription factor GT-3a-like
SwissprotQ9SDW01e-137TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A398A5Y00.0A0A398A5Y0_BRACM; Uncharacterized protein
STRINGBo2g001280.11e-179(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-104Trihelix family protein