PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009124666.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 821aa MW: 91321.3 Da PI: 5.62

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009124666.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.3e-29	546	596	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_009124666.1 546 EKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 596 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.45	535	616	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-26	548	596	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.29E-21	708	806	No hit	No description
SMART	SM00666	2.0E-23	717	803	IPR000270	PB1 domain
PROSITE profile	PS51745	19.789	717	803	IPR000270	PB1 domain
CDD	cd06407	5.01E-33	718	802	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.0E-25	718	803	No hit	No description
Pfam	PF00564	1.2E-17	718	802	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 821 aa Download sequence Send to blast
MELDDLDLGS SWPLDQISFA SSNFRFPSSD QPFSPLWSFS SADGGAGELC SAPTLLTDYS 60 LLLASSESET ATKDNHLLPS PSWGVQMPLE NPDTYCAIKA KMTQALRFFK ESTGQQHLLA 120 QVWAPVKNRN GRYLLTTSGQ PFFLGPNSNG LNQYRMVSLT YMFSLDSERD GELGLPGRVF 180 RKKLPEWTPN VQYYSSKEFS RLGHALNYNV QGTLALPVFE PSRQLCVGVV ELIMTSPKIN 240 YAPEVEKVCK ALEAVNLKTS EILNPESTQI CNEGRQNALA EILEILTVVC ETYKLPLAQT 300 WVPCRHRSVL AFGGGFKKSC SSFDGSCMGK VCMSTSDLAV YVVDAHVWGF RDACAEHHLQ 360 KGQGVAGRAF LSGNLCFSRD VTRFCKTDYP LVHYARMFKL TSCFAVCLKS TYTGDDEYVL 420 EFFLPPGVTD EGEQDSLLGS LFQTMKQHYS SLKVVSGTEL FENEMSIEVV EASEDGMVYS 480 KREPIQISIS KDYLELNAPE EKLSLNPDLV ENNEVANGFE RFQTVNPSPE EAKTEKKTER 540 KRGKTEKTIS LEVLQQYFAG SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL 600 TRLKHVIDSV QGADGSINLT SLSPRPWQVS QPPPPTTGSP TNYIKLENRD AEDSAGSSTS 660 RASCKVSPIS ETRFRLLTQN QEAFKQTAFD ESDSTSKNIA NFWTSQDTTT LLHNNKLVSI 720 KATYREDIIR FKISPESISI AELKEQVAKR LKLETGAFEL KYLDDDKEWV SVSCDADLSE 780 CLDTSSVVTA AKANTLRLSV HDVTPNFGSS CESSEETMMC L

Sequence ? help Back to Top

Protein Sequence Length: 821 aa Download sequence Send to blast

MELDDLDLGS SWPLDQISFA SSNFRFPSSD QPFSPLWSFS SADGGAGELC SAPTLLTDYS  60
LLLASSESET ATKDNHLLPS PSWGVQMPLE NPDTYCAIKA KMTQALRFFK ESTGQQHLLA  120
QVWAPVKNRN GRYLLTTSGQ PFFLGPNSNG LNQYRMVSLT YMFSLDSERD GELGLPGRVF  180
RKKLPEWTPN VQYYSSKEFS RLGHALNYNV QGTLALPVFE PSRQLCVGVV ELIMTSPKIN  240
YAPEVEKVCK ALEAVNLKTS EILNPESTQI CNEGRQNALA EILEILTVVC ETYKLPLAQT  300
WVPCRHRSVL AFGGGFKKSC SSFDGSCMGK VCMSTSDLAV YVVDAHVWGF RDACAEHHLQ  360
KGQGVAGRAF LSGNLCFSRD VTRFCKTDYP LVHYARMFKL TSCFAVCLKS TYTGDDEYVL  420
EFFLPPGVTD EGEQDSLLGS LFQTMKQHYS SLKVVSGTEL FENEMSIEVV EASEDGMVYS  480
KREPIQISIS KDYLELNAPE EKLSLNPDLV ENNEVANGFE RFQTVNPSPE EAKTEKKTER  540
KRGKTEKTIS LEVLQQYFAG SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL  600
TRLKHVIDSV QGADGSINLT SLSPRPWQVS QPPPPTTGSP TNYIKLENRD AEDSAGSSTS  660
RASCKVSPIS ETRFRLLTQN QEAFKQTAFD ESDSTSKNIA NFWTSQDTTT LLHNNKLVSI  720
KATYREDIIR FKISPESISI AELKEQVAKR LKLETGAFEL KYLDDDKEWV SVSCDADLSE  780
CLDTSSVVTA AKANTLRLSV HDVTPNFGSS CESSEETMMC L

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009124666.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009124666.1	0.0	PREDICTED: protein NLP6 isoform X1
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	M4FII5	0.0	M4FII5_BRARP; Uncharacterized protein
STRING	Bra040914.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]