PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122379.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 252aa    MW: 28426 Da    PI: 6.6837
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.51.7e-1324106286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W+++ + +Liea  ++  +l+rg+l++++W+ev++++       g  ++ +qCk++++ l+k+yk +k+  +       s++ +f++l+
  XP_009122379.1  24 WSEDATATLIEAWGDRYINLSRGNLRQNDWREVADAVnsihGGSGRPKTDVQCKNRIDTLKKKYKTEKAKPSP------SSWCFFERLD 106
                     *************************************99776777788******************9998885......4699999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-2522107No hitNo description
SMARTSM005954.3E-431113IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
METTPETQSK SHPHRLPPGR EDWWSEDATA TLIEAWGDRY INLSRGNLRQ NDWREVADAV  60
NSIHGGSGRP KTDVQCKNRI DTLKKKYKTE KAKPSPSSWC FFERLDFLIG PVAAKKSTGV  120
VTPALKNHTL NQTGSKSSGS SLDDDDDDDD DDEVGEWGFV VRKHRRVEEV DPSGGEGSSC  180
RELARAILKL GEVYERMEGA KQRMMVELEK QRMEAAKELE LQRMNMLMDM QMELERSKLG  240
KCRAAAASGK KL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122379.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122379.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLM4EZC20.0M4EZC2_BRARP; Uncharacterized protein
STRINGBra034165.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.11e-122sequence-specific DNA binding transcription factors