PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117169.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 310aa    MW: 34482.8 Da    PI: 9.9868
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117169.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.81.6e-1463147186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ + +Li+a  e++ +l+rg+lk+++We+v++ +       ++  ++ +qCk++++ ++k+yk++k ++++      s++++fd+l+
  XP_009117169.1  63 CWSEKATGVLIDAWGEIHLELSRGNLKQKHWEKVAETVrskeeDNGKTPKTDVQCKNRIDTVKKKYKQEKLRSGR------SSWVFFDKLD 147
                     7*************************************99988888899*********************99997......46******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.9E-2361149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MADDEDQIRS QSDSPDPSSS SPPPSGKVTV TVAFPGPPQK TPDASPLALL PIKSSGGGGR  60
EDCWSEKATG VLIDAWGEIH LELSRGNLKQ KHWEKVAETV RSKEEDNGKT PKTDVQCKNR  120
IDTVKKKYKQ EKLRSGRSSW VFFDKLDRLI GSTAKISPAP PPSGLGGGGG LHNIPMGIPM  180
GRGLNLYHQQ GKAETPRFGG TASESKRWPL RRKRNVSDSH SEDSGGDDSL PPPPPPLPLS  240
KRGNKWREVS SAIMRFGEAY EQIENAKLQQ VVEMEKERLR FLKELESQRR HFFVKFQFEL  300
SQQREENGKH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.158440.0flower| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117169.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117169.10.0PREDICTED: trihelix transcription factor ASIL2 isoform X1
SwissprotQ9LJG81e-102ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLM4DYD80.0M4DYD8_BRARP; Uncharacterized protein
STRINGBra021534.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-76sequence-specific DNA binding transcription factors